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Documents revealing sensitive information about individuals must typically be de-identified. This de-identification is often done by masking all mentions of personally identifiable information (PII), thereby making it more difficult to…

Computation and Language · Computer Science 2025-05-20 Lucas Georges Gabriel Charpentier , Pierre Lison

Large language models (LLMs) offer new opportunities for constructing knowledge graphs (KGs) from unstructured clinical narratives. However, existing approaches often rely on structured inputs and lack robust validation of factual accuracy…

Artificial Intelligence · Computer Science 2026-01-06 Udiptaman Das , Krishnasai B. Atmakuri , Duy Ho , Chi Lee , Yugyung Lee

Personality traits are richly encoded in natural language, and large language models (LLMs) trained on human text can simulate personality when conditioned on persona descriptions. However, existing evaluations rely predominantly on…

Computation and Language · Computer Science 2026-04-08 Ben Wigler , Maria Tsfasman , Tiffany Matej Hrkalovic

Natural Language Processing (NLP) is a key technique for developing Medical Artificial Intelligence (AI) systems that leverage Electronic Health Record (EHR) data to build diagnostic and prognostic models. NLP enables the conversion of…

Clinical AI systems routinely train on health data structurally distorted by documentation workflows, billing incentives, and terminology fragmentation. Prior work has characterised the mechanisms of this distortion: the three-forces model…

Artificial Intelligence · Computer Science 2026-04-03 Florian Odi Stummer

Objective The evaluation of natural language processing (NLP) models for clinical text de-identification relies on the availability of clinical notes, which is often restricted due to privacy concerns. The NLP Sandbox is an approach for…

Unstructured textual data are at the heart of health systems: liaison letters between doctors, operating reports, coding of procedures according to the ICD-10 standard, etc. The details included in these documents make it possible to get to…

Cryptography and Security · Computer Science 2023-10-09 Yakini Tchouka , Jean-François Couchot , Maxime Coulmeau , David Laiymani , Philippe Selles , Azzedine Rahmani

The CEGS N-GRID 2016 Shared Task 1 in Clinical Natural Language Processing focuses on the de-identification of psychiatric evaluation records. This paper describes two participating systems of our team, based on conditional random fields…

Computation and Language · Computer Science 2017-10-02 Zhipeng Jiang , Chao Zhao , Bin He , Yi Guan , Jingchi Jiang

Long-horizon conversational agents rely on memory systems with increasingly sophisticated retrieval mechanisms. However, retrieved fragments are typically fed to the language model as unstructured text, lacking the relational, temporal, and…

Computation and Language · Computer Science 2026-05-05 Yushi Sun , Bowen Cao , Dong Fang , Lingfeng Su , Wai Lam

Data containing personal information is increasingly used to train, fine-tune, or query Large Language Models (LLMs). Text is typically scrubbed of identifying information prior to use, often with tools such as Microsoft's Presidio or…

Computation and Language · Computer Science 2026-02-16 Nataša Krčo , Zexi Yao , Matthieu Meeus , Yves-Alexandre de Montjoye

Computational text phenotyping is the practice of identifying patients with certain disorders and traits from clinical notes. Rare diseases are challenging to be identified due to few cases available for machine learning and the need for…

Face anonymization aims to conceal identity information while preserving non-identity attributes. Mainstream diffusion models rely on inference-time interventions such as negative guidance or energy-based optimization, which are applied…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Haoxin Yang , Yihong Lin , Jingdan Kang , Xuemiao Xu , Yue Li , Cheng Xu , Shengfeng He

Functional magnetic resonance imaging (fMRI) is widely used for studying and diagnosing brain disorders, with functional connectivity (FC) matrices providing powerful representations of large-scale neural interactions. However, existing…

Tissues and Organs · Quantitative Biology 2026-04-17 Qianyu Chen , Shujian Yu

This paper takes on the problem of automatically identifying clinically-relevant patterns in medical datasets without compromising patient privacy. To achieve this goal, we treat datasets as a black box for both internal and external users…

Software Engineering · Computer Science 2015-01-26 Nafees Qamar , Yilong Yang , Andras Nadas , Zhiming Liu , Janos Sztipanovits

With the rise of cameras and smart sensors, humanity generates an exponential amount of data. This valuable information, including underrepresented cases like AI in medical settings, can fuel new deep-learning tools. However, data…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Zikui Cai , Zhongpai Gao , Benjamin Planche , Meng Zheng , Terrence Chen , M. Salman Asif , Ziyan Wu

Large language models (LLMs) have demonstrated promising capabilities in Text-Attributed Graph (TAG) understanding. Recent studies typically focus on verbalizing the graph structures via handcrafted prompts, feeding the target node and its…

Artificial Intelligence · Computer Science 2026-01-21 Zijun Di , Bin Lu , Huquan Kang , Luoyi Fu , Jiaxin Ding , Xiaoying Gan , Lei Zhou , Xinbing Wang , Chenghu Zhou

Psychological defense mechanisms (PDMs) are unconscious cognitive processes that modulate how individuals perceive and respond to emotional distress. Automatically classifying PDMs from text is clinically valuable but severely hindered by…

Computation and Language · Computer Science 2026-05-15 Hoang-Thuy-Duong Vu , Quoc-Cuong Pham , Huy-Hieu Pham

Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling…

Artificial Intelligence · Computer Science 2025-11-18 Zhengda Wang , Daqian Shi , Jingyi Zhao , Xiaolei Diao , Xiongfeng Tang , Yanguo Qin

Timely and accurate analysis of population-level data is crucial for effective decision-making during public health emergencies such as the COVID-19 pandemic. However, the massive input of semi-structured data, including structured…

Artificial Intelligence · Computer Science 2025-10-08 Daqian Shi , Xiaolei Diao , Jinge Wu , Honghan Wu , Xiongfeng Tang , Felix Naughton , Paulina Bondaronek

Understanding how humans process visual information is one of the crucial steps for unraveling the underlying mechanism of brain activity. Recently, this curiosity has motivated the fMRI-to-image reconstruction task; given the fMRI data…

Computer Vision and Pattern Recognition · Computer Science 2024-09-19 Jaehoon Joo , Taejin Jeong , Seongjae Hwang