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Motivated by applications in DNA-based storage and communication systems, we study deletion and insertion errors simultaneously in a burst. In particular, we study a type of error named $t$-deletion-$s$-insertion-burst ($(t,s)$-burst for…

Information Theory · Computer Science 2022-11-23 Ziyang Lu , Yiwei Zhang

We first give a construction of binary $t_1$-deletion-$t_2$-insertion-burst correcting codes with redundancy at most $\log(n)+(t_1-t_2-1)\log\log(n)+O(1)$, where $t_1\ge 2t_2$. Then we give an improved construction of binary codes capable…

Information Theory · Computer Science 2022-11-23 Zuo Ye , Ohad Elishco

The problem of correcting deletions has received significant attention, partly because of the prevalence of these errors in DNA data storage. In this paper, we study the problem of correcting a consecutive burst of at most $t$ deletions in…

Information Theory · Computer Science 2022-10-24 Shuche Wang , Yuanyuan Tang , Jin Sima , Ryan Gabrys , Farzad Farnoud

We study segmented burst-deletion channels motivated by the observation that synchronization errors commonly occur in a bursty manner in real-world settings. In this channel model, transmitted sequences are implicitly divided into…

Information Theory · Computer Science 2025-07-21 Yajuan Liu , Tolga M. Duman

Recently, codes for correcting a burst of errors have attracted significant attention. One of the most important reasons is that bursts of errors occur in certain emerging techniques, such as DNA storage. In this paper, we investigate a…

Information Theory · Computer Science 2025-01-20 Yubo Sun , Ziyang Lu , Yiwei Zhang , Gennian Ge

In this paper, we propose a partitioning technique that decomposes a pair of sequences with overlapping $t$-deletion $s$-substitution balls into sub-pairs, where the $^{\leq}t$-burst-deletion balls of each sub-pair intersect. This…

Information Theory · Computer Science 2025-06-10 Yubo Sun , Gennian Ge

Codes correcting bursts of deletions and localized deletions have garnered significant research interest in recent years. One of the primary objectives is to construct codes with minimal redundancy. Currently, the best known constructions…

Information Theory · Computer Science 2025-07-08 Zuo Ye , Yubo Sun , Gennian Ge

This paper studies the problem of constructing codes correcting deletions in arrays. Under this model, it is assumed that an $n\times n$ array can experience deletions of rows and columns. These deletion errors are referred to as…

Information Theory · Computer Science 2021-06-02 Rawad Bitar , Lorenz Welter , Ilia Smagloy , Antonia Wachter-Zeh , Eitan Yaakobi

This paper investigates the problem of correcting multiple criss-cross insertions and deletions in arrays. More precisely, we study the unique recovery of $n \times n$ arrays affected by $t$-criss-cross deletions defined as any combination…

Information Theory · Computer Science 2021-11-16 Lorenz Welter , Rawad Bitar , Antonia Wachter-Zeh , Eitan Yaakobi

In this paper, we construct systematic $q$-ary two-deletion correcting codes and burst-deletion correcting codes, where $q\geq 2$ is an even integer. For two-deletion codes, our construction has redundancy $5\log n+O(\log q\log\log n)$ and…

Information Theory · Computer Science 2022-10-26 Wentu Song , Kui Cai

Synthetic DNA can in principle be used for the archival storage of arbitrary data. Because errors are introduced during DNA synthesis, storage, and sequencing, an error-correcting code (ECC) is necessary for error-free recovery of the data.…

Quantitative Methods · Quantitative Biology 2018-12-05 William H. Press , John A. Hawkins

In recent years, the emergence of DNA storage systems has led to a widespread focus on the research of codes correcting insertions, deletions, and classic substitutions. During the initial investigation, Levenshtein discovered the VT codes…

Information Theory · Computer Science 2024-01-23 Yuhang Pi , Zhifang Zhang

In this paper, we investigate codes designed to correct two bursts of deletions, where each burst has a length of exactly $b$, where $b>1$. The previous best construction, achieved through the syndrome compression technique, had a…

Information Theory · Computer Science 2025-09-09 Zuo Ye , Yubo Sun , Wenjun Yu , Gennian Ge , Ohad Elishco

The problem of correcting deletions and insertions has recently received significantly increased attention due to the DNA-based data storage technology, which suffers from deletions and insertions with extremely high probability. In this…

Information Theory · Computer Science 2023-11-09 Tuan Thanh Nguyen , Kui Cai , Paul H. Siegel

This paper gives some theory and efficient design of binary block systematic codes capable of controlling the deletions of the symbol ``$0$'' (referred to as $0$-deletions) and/or the insertions of the symbol ``$0$'' (referred to as…

Information Theory · Computer Science 2023-02-14 Luca G. Tallini , Nawaf Alqwaifly , Bella Bose

Motivated by applications to DNA-storage, flash memory, and magnetic recording, we study perfect burst-correcting codes for the limited-magnitude error channel. These codes are lattices that tile the integer grid with the appropriate error…

Information Theory · Computer Science 2022-01-06 Hengjia Wei , Moshe Schwartz

This paper studies codes that correct bursts of deletions. Namely, a code will be called a $b$-burst-deletion-correcting code if it can correct a deletion of any $b$ consecutive bits. While the lower bound on the redundancy of such codes…

Information Theory · Computer Science 2016-05-16 Clayton Schoeny , Antonia Wachter-Zeh , Ryan Gabrys , Eitan Yaakobi

The growing demand for highly reliable communication systems drives the research and development of algorithms that identify and correct errors during data transmission and storage. This need becomes even more critical in hard-to-access or…

Cryptography and Security · Computer Science 2025-04-17 Andrew Rafael Fritsch , César Augusto Missio Marcon

We construct two-dimensional codes for correcting burst errors using the finite field Fourier transform. The encoding procedure is performed in the transformed domain using the conjugacy property of the finite field Fourier transform. The…

Information Theory · Computer Science 2015-08-04 Shounak Roy , Shayan G. Srinivasa

This paper extends the foundational work of Dollma \emph{et al}. on codes for ordered composite DNA sequences. We consider the general setting with an alphabet of size $q$ and a resolution parameter $k$, moving beyond the binary ($q=2$)…

Information Theory · Computer Science 2026-02-19 Zuo Ye , Yuling Li , Zhaojun Lan , Gennian Ge
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