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The sequence reconstruction problem involves a model where a sequence is transmitted over several identical channels. This model investigates the minimum number of channels required for the unique reconstruction of the transmitted sequence.…

Information Theory · Computer Science 2025-04-30 Zhaojun Lan , Yubo Sun , Wenjun Yu , Gennian Ge

Due to its high data density and longevity, DNA is considered a promising medium for satisfying ever-increasing data storage needs. However, the diversity of errors that occur in DNA sequences makes efficient error-correction a challenging…

Information Theory · Computer Science 2020-11-12 Yuanyuan Tang , Farzad Farnoud

We consider the problem of correcting insertion and deletion errors in the $d$-dimensional space. This problem is well understood for vectors (one-dimensional space) and was recently studied for arrays (two-dimensional space). For vectors…

Information Theory · Computer Science 2022-08-11 Evagoras Stylianou , Lorenz Welter , Rawad Bitar , Antonia Wachter-Zeh , Eitan Yaakobi

Phased burst errors (PBEs) are bursts of errors occurring at one or more known locations. The correction of PBEs is a classical topic in coding theory, with prominent applications such as the design of array codes for memory systems or…

Information Theory · Computer Science 2025-01-29 Sebastian Bitzer , Andrea Di Giusto , Alberto Ravagnani , Eitan Yaakobi

Ongoing research and experiments have enabled quantum memory to realize the storage of qubits. On the other hand, interleaving techniques are used to deal with burst of errors. Effective interleaving techniques for combating burst of errors…

This paper constructs a non-binary code correcting a single $b$-burst of insertions or deletions with a large cardinality. This paper also proposes a decoding algorithm of this code and evaluates a lower bound of the cardinality of this…

Information Theory · Computer Science 2018-08-10 Toyohiko Saeki , Takayuki Nozaki

Recent experiments have demonstrated the feasibility of storing digital information in macromolecules such as DNA and protein. However, the DNA storage channel is prone to errors such as deletions, insertions, and substitutions. During the…

Information Theory · Computer Science 2024-10-22 Aryan Abbasian , Mahtab Mirmohseni , Masoumeh Nasiri Kenari

In communication and storage systems, error correction codes (ECCs) are pivotal in ensuring data reliability. As deep learning's applicability has broadened across diverse domains, there is a growing research focus on neural network-based…

Machine Learning · Computer Science 2023-08-28 Seong-Joon Park , Hee-Youl Kwak , Sang-Hyo Kim , Sunghwan Kim , Yongjune Kim , Jong-Seon No

In this paper, we study how often unique decoding from $t$ insertions or $t$ deletions occurs for error correcting codes. Insertions and deletions frequently occur in synchronization problems and DNA, a medium which is beginning to be used…

Information Theory · Computer Science 2017-09-29 Kayvon Mazooji

Labeling of DNA molecules is a fundamental technique for DNA visualization and analysis. This process was mathematically modeled in [1], where the received sequence indicates the positions of the used labels. In this work, we develop error…

Information Theory · Computer Science 2025-11-04 Dganit Hanania , Eitan Yaakobi

In this paper we present several constructions to generate codes for correcting a multidimensional cluster-error. The goal is to correct a cluster-error whose shape can be a box-error, a Lee sphere error, or an error with an arbitrary…

Information Theory · Computer Science 2007-12-27 Tuvi Etzion , Eitan Yaakobi

Motivated by modern network communication applications which require low latency, we study codes that correct erasures with low decoding delay. We provide a simple explicit construction that yields convolutional codes that can correct both…

Information Theory · Computer Science 2023-02-20 Serge Kas Hanna , Zhiyuan Tan , Wen Xu , Antonia Wachter-Zeh

We design low-complexity error correction coding schemes for channels that introduce different types of errors and erasures: on the one hand, the proposed schemes can successfully deal with symbol errors and erasures, and, on the other…

Information Theory · Computer Science 2014-02-28 Ron M. Roth , Pascal O. Vontobel

Quantum burst error correction codes (QBECCs) are of great importance to deal with the memory effect in quantum channels. As the most important family of QBECCs, quantum cyclic codes (QCCs) play a vital role in the correction of burst…

Quantum Physics · Physics 2026-02-03 Jihao Fan , Min-Hsiu Hsieh

This paper addresses fundamental challenges in two-dimensional error correction by constructing optimal codes for \emph{criss-cross deletions}. We consider an $ n \times n $ array $\boldsymbol{X}$ over a $ q $-ary alphabet $\Sigma_q := \{0,…

Information Theory · Computer Science 2025-10-23 Yubo Sun , Gennian Ge

Reconstruction codes are generalizations of error-correcting codes that can correct errors by a given number of noisy reads. The study of such codes was initiated by Levenshtein in 2001 and developed recently due to applications in modern…

Information Theory · Computer Science 2023-02-21 Zuo Ye , Xin Liu , Xiande Zhang , Gennian Ge

We propose two systematic constructions of deletion-correcting codes for protecting quantum information. The first one works with qudits of any dimension, but only one deletion is corrected and the constructed codes are asymptotically bad.…

Quantum Physics · Physics 2022-03-07 Ryutaroh Matsumoto , Manabu Hagiwara

Correcting insertions/deletions as well as substitution errors simultaneously plays an important role in DNA-based storage systems as well as in classical communications. This paper deals with the fundamental task of constructing codes that…

Information Theory · Computer Science 2020-05-20 Ilia Smagloy , Lorenz Welter , Antonia Wachter-Zeh , Eitan Yaakobi

In this paper, we present an efficiently encodable and decodable code construction that is capable of correction a burst of deletions of length at most $k$. The redundancy of this code is $\log n + k(k+1)/2\log \log n+c_k$ for some constant…

Information Theory · Computer Science 2020-01-22 Andreas Lenz , Nikita Polyanskii

Motivated by mutation processes occurring in in-vivo DNA-storage applications, a channel that mutates stored strings by duplicating substrings as well as substituting symbols is studied. Two models of such a channel are considered: one in…

Information Theory · Computer Science 2020-07-01 Yuanyuan Tang , Yonatan Yehezkeally , Moshe Schwartz , Farzad Farnoud