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We explore theoretically the complex dynamics and emergent behaviors of spinning spheres immersed in viscous fluid. The particles are coupled to each-other via the fluid in which they are suspended: each particle disturbs the surrounding…

Fluid Dynamics · Physics 2015-09-18 Enkeleida Lushi , Petia M. Vlahovska

We numerically investigate the hydrodynamics and membrane dynamics of multicomponent vesicles in two strongly confined geometries. This serves as a simplified model for red blood cells undergoing large deformations while traversing narrow…

Soft Condensed Matter · Physics 2023-08-21 Ashley Gannon , Bryan Quaife , Y. -N. Young

The ordering of rod-like particles in soft, deformable containers emerges from the interplay of anisotropic interactions, geometric confinement, and boundary compliance. This competition couples internal particle organization to container…

Soft Condensed Matter · Physics 2026-05-22 Stijn van der Ham , André F. V. Matias , Marjolein Dijkstra , Hanumantha Rao Vutukuri

We present the results of molecular dynamics computer simulations of a binary Lennard-Jones liquid confined between two parallel rough walls. These walls are realized by frozen amorphous configurations of the same liquid and therefore the…

Condensed Matter · Physics 2009-09-29 Peter Scheidler , Walter Kob , Kurt Binder

Efficient mixing of fluids is essential in many practical applications to achieve homogeneity. For microscopic systems, however, both diffusion and turbulence are ineffective methods to achieve chaotic mixing due to the low Reynolds number,…

Soft Condensed Matter · Physics 2025-09-18 Yue Wang , Jonas Berx

The dynamics of active smectic liquid crystals confined on a spherical surface is explored through an active phase field crystal model. Starting from an initially randomly perturbed isotropic phase, several types of topological defects are…

Soft Condensed Matter · Physics 2025-03-11 Michael Nestler , Simon Praetorius , Zhi-Feng Huang , Hartmut Löwen , Axel Voigt

The coupling of active, self-motile particles to topological constraints can give rise to novel non-equilibrium dynamical patterns that lack any passive counterpart. Here we study the behavior of self-propelled rods confined to a compact…

Statistical Mechanics · Physics 2018-08-21 Liesbeth M. C. Janssen , Andreas Kaiser , Hartmut Löwen

Depinning and nonequilibrium transitions within sliding states in systems driven over quenched disorder arise across a wide spectrum of size scales ranging from atomic friction at the nanoscale, flux motion in type-II superconductors at the…

Soft Condensed Matter · Physics 2017-03-22 Cs. Sándor , A. Libál , C. Reichhardt , C. J. Olson Reichhardt

We study a three-dimensional system of self-propelled Lennard-Jones particles using Brownian Dynamics simulations. Using recent theoretical results for active matter, we calculate the pressure and report equations of state for the system.…

Soft Condensed Matter · Physics 2016-10-04 Vasileios Prymidis , Siddharth Paliwal , Marjolein Dijkstra , Laura Filion

Collective behavior of self-propelled particles is observed on a microscale for swimmers such as sperm and bacteria as well as for protein filaments in motility assays. The properties of such systems depend both on their dimensionality and…

Soft Condensed Matter · Physics 2014-01-07 Masoud Abkenar , Kristian Marx , Thorsten Auth , Gerhard Gompper

Recent studies of the phase diagram for spherical, purely repulsive, active particles established the existence of a transition from a liquid-like to a solid-like phase analogous to the one observed in colloidal systems at thermal…

Statistical Mechanics · Physics 2020-04-30 Lorenzo Caprini , Claudio Maggi , Umberto Marini Bettolo Marconi , Matteo Paoluzzi , Andrea Puglisi

Liquid-liquid phase separation of aqueous two-phase system (ATPS) is fundamental across physical and biological sciences. While well understood for passive systems, how this process is regulated by active agents such as motile bacteria…

Soft Condensed Matter · Physics 2025-11-25 Dixi Yang , Anheng Wang , Chunming Wang , Hajime Tanaka , Jiaxing Yuan

Gluodynamics in 3D spacetime with one spatial direction compactified into a circle of length $L$ is studied. The confinement order parameters, such as the Polyakov loops, are analyzed in both the limits $L \to 0$ and $L \to \infty$. In the…

High Energy Physics - Theory · Physics 2016-09-06 A. Ferrando , A. Jaramillo , S. Shabanov , .

The classical game of rock-paper-scissors have inspired experiments and spatial model systems that address robustness of biological diversity. In particular the game nicely illustrates that cyclic interactions allow multiple strategies to…

Cellular Automata and Lattice Gases · Physics 2016-04-20 Namiko Mitarai , Ivar Gunnarson , Buster Niels Pedersen , Christian Anker Rosiek , Kim Sneppen

Proteins and nucleic acids can spontaneously self-assemble into membraneless droplet-like compartments, both in vitro and in vivo. A key component of these droplets are multi-valent proteins that possess several adhesive domains with…

Biomolecules · Quantitative Biology 2020-01-10 Srivastav Ranganathan , Eugene Shakhnovich

Phase separation of biomolecular condensates promotes membrane-free compartmentalization in cells. The dynamics of these biocondensates is routinely regulated by energy-consuming processes. Here, we devise a theory pinpointing how active…

Biological Physics · Physics 2026-01-08 Benjamin Sorkin , Ned S. Wingreen

We use molecular dynamics simulations to study the behavior of a compressible Lennard-Jones fluid in simple shear flow in a two-dimensional nanochannel. The system is equilibrated in the fluid phase close to the triple point at which gas,…

Soft Condensed Matter · Physics 2017-03-31 Madhu Priya , Yitzhak Rabin

From studies via Molecular Dynamics simulations, we report results on structure and dynamics in mixtures of active colloids and passive polymers that are confined inside a spherical container with a repulsive boundary. Such systems mimic…

Soft Condensed Matter · Physics 2021-12-02 Arabinda Bera , Kurt Binder , Sergei A. Egorov , Subir K. Das

Monte Carlo simulations within the grand canonical ensemble are used to explore the liquid-vapour coexistence curve and critical point properties of the Lennard-Jones fluid. Attention is focused on the joint distribution of density and…

Condensed Matter · Physics 2009-10-28 Nigel B. Wilding

We study critical dynamics and phase-ordering kinetics in Active Model B (AMB) and its minimal extension, Active Model B$+$ (AMB$+$), using deterministic simulations in two dimensions. At criticality $r_c=0$, both models display identical…

Statistical Mechanics · Physics 2026-04-09 Abir Bhowmick , P. K. Mohanty
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