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Benchmark rankings are routinely used to justify scientific claims about method quality in gene regulatory network (GRN) inference, yet the stability of these rankings under plausible evaluation protocol choices is rarely examined. We…

Molecular Networks · Quantitative Biology 2026-03-05 Ihor Kendiukhov

Parametric projections let analysts embed new points in real time, but input variations from measurement noise or data drift can produce unpredictable shifts in the 2D layout. Whether and where a projection is locally stable remains largely…

Computer Vision and Pattern Recognition · Computer Science 2026-04-24 Frederik L. Dennig , Daniel A. Keim

Characterizing precisely the asymptotic generalization error of neural networks using parameters that can be estimated efficiently is a crucial problem in machine learning, which relies heavily on heuristics and practitioners' intuition to…

Machine Learning · Computer Science 2026-05-22 David Perera , Victor Moura , Lais Isabelle Alves dos Santos , Michel F. C. Haddad , Flavio Figueiredo

Spatial nonstationarity, the location variance of features' statistical distributions, is ubiquitous in many natural settings. For example, in geological reservoirs rock matrix porosity varies vertically due to geomechanical compaction…

Machine Learning · Computer Science 2023-08-09 Lei Liu , Javier E. Santos , Maša Prodanović , Michael J. Pyrcz

The aim of this Lecture Note is to introduce the Signal Processing (SP) community to a powerful yet still under-utilised tool: the semiparametric statistics. In short, the semiparametric framework allows us to estimate or perform hypothesis…

Signal Processing · Electrical Eng. & Systems 2026-05-26 Stefano Fortunati

In representation learning, uniformity refers to the uniform feature distribution in the latent space (i.e., unit hypersphere). Previous work has shown that improving uniformity contributes to the learning of under-represented classes.…

Machine Learning · Computer Science 2025-03-04 Zijian Dong , Yilei Wu , Chongyao Chen , Yingtian Zou , Yichi Zhang , Juan Helen Zhou

Deep neural networks have achieved impressive results in many image classification tasks. However, since their performance is usually measured in controlled settings, it is important to ensure that their decisions remain correct when…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Apostolos Modas

Graph structure learning aims to learn connectivity in a graph from data. It is particularly important for many computer vision related tasks since no explicit graph structure is available for images for most cases. A natural way to…

Computer Vision and Pattern Recognition · Computer Science 2022-12-26 Yaohua Wang , FangYi Zhang , Ming Lin , Senzhang Wang , Xiuyu Sun , Rong Jin

We present a unified geometric framework for modeling learning dynamics in physical, biological, and machine learning systems. The theory reveals three fundamental regimes, each emerging from the power-law relationship $g \propto…

Machine Learning · Computer Science 2026-03-17 Vitaly Vanchurin

What representation do deep neural networks learn? How similar are images to each other for neural networks? Despite the overwhelming success of deep learning methods key questions about their internal workings still remain largely…

Computer Vision and Pattern Recognition · Computer Science 2024-10-31 Tassilo Wald , Constantin Ulrich , Gregor Köhler , David Zimmerer , Stefan Denner , Michael Baumgartner , Fabian Isensee , Priyank Jaini , Klaus H. Maier-Hein

Most of the recent deep learning-based 3D human pose and mesh estimation methods regress the pose and shape parameters of human mesh models, such as SMPL and MANO, from an input image. The first weakness of these methods is an appearance…

Computer Vision and Pattern Recognition · Computer Science 2021-04-28 Hongsuk Choi , Gyeongsik Moon , Kyoung Mu Lee

Inspired by convolutional neural networks on 1D and 2D data, graph convolutional neural networks (GCNNs) have been developed for various learning tasks on graph data, and have shown superior performance on real-world datasets. Despite their…

Machine Learning · Computer Science 2019-05-15 Saurabh Verma , Zhi-Li Zhang

Large transformers are powerful architectures used for self-supervised data analysis across various data types, including protein sequences, images, and text. In these models, the semantic structure of the dataset emerges from a sequence of…

Machine Learning · Computer Science 2023-10-31 Lucrezia Valeriani , Diego Doimo , Francesca Cuturello , Alessandro Laio , Alessio Ansuini , Alberto Cazzaniga

Comparing the internal representations of neural networks is a central goal in both neuroscience and machine learning. Standard alignment metrics operate on raw neural activations, implicitly assuming that similar representations produce…

Machine Learning · Computer Science 2026-04-02 Sunny Liu , Habon Issa , André Longon , Liv Gorton , Meenakshi Khosla , David Klindt

Latent space matching, which consists of matching distributions of features in latent space, is a crucial component for tasks such as adversarial attacks and defenses, domain adaptation, and generative modelling. Metrics for probability…

Machine Learning · Computer Science 2025-03-05 Hiu-Tung Wong , Darrick Lee , Hong Yan

Information can evolve as a physical consequence of non-equilibrium dynamics, even in the absence of genes, replication, or predefined fitness functions. We present Stability-Driven Assembly (SDA), a framework in which stochastic assembly…

Populations and Evolution · Quantitative Biology 2026-05-11 Dan Adler

Traditional analyses of gradient descent optimization show that, when the largest eigenvalue of the loss Hessian - often referred to as the sharpness - is below a critical learning-rate threshold, then training is 'stable' and training loss…

Machine Learning · Computer Science 2024-12-24 Lawrence Wang , Stephen J. Roberts

This paper discusses the interplay of symmetries and stability in the analysis and control of nonlinear dynamical systems and networks. Specifically, it combines standard results on symmetries and equivariance with recent convergence…

Dynamical Systems · Mathematics 2015-05-20 Giovanni Russo , Jean-Jacques E. Slotine

A common assumption in representation learning is that globally well-distributed embeddings support robust and generalizable representations. This focus has shaped both training objectives and evaluation protocols, implicitly treating…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Jiwan Chung , Seon Joo Kim

Image representations (artificial or biological) are often compared in terms of their global geometric structure; however, representations with similar global structure can have strikingly different local geometries. Here, we propose a…

Neurons and Cognition · Quantitative Biology 2025-05-19 Jenelle Feather , David Lipshutz , Sarah E. Harvey , Alex H. Williams , Eero P. Simoncelli