Related papers: Some New Results on Sequence Reconstruction Proble…

The nearest lattice point problem in $\mathbb{R}^n$ is formulated in a distributed network with $n$ nodes. The objective is to minimize the probability that an incorrect lattice point is found, subject to a constraint on inter-node…

The Median String Problem is W[1]-Hard under the Levenshtein distance, thus, approximation heuristics are used. Perturbation-based heuristics have been proved to be very competitive as regards the ratio approximation accuracy/convergence…

In the beautifully simple-to-state problem of trace reconstruction, the goal is to reconstruct an unknown binary string $x$ given random "traces" of $x$ where each trace is generated by deleting each coordinate of $x$ independently with…

The repetition threshold of a class of sequences is the smallest number $r$ such that a sequence from the class contains no repetition with exponent $> r$. We focus on the class $\mathcal{C}_d$ of $d$-ary sequences rich in palindromes. In…

One of the longest-standing open problems in computational geometry is to bound the lower envelope of $n$ univariate functions, each pair of which crosses at most $s$ times, for some fixed $s$. This problem is known to be equivalent to…

The problem of string reconstruction based on its substrings spectrum has received significant attention recently due to its applicability to DNA data storage and sequencing. In contrast to previous works, we consider in this paper a setup…

We study the problem of computing a longest increasing subsequence in a sequence $S$ of $n$ distinct elements in the presence of persistent comparison errors. In this model, every comparison between two elements can return the wrong result…

We wish to bring attention to a natural but slightly hidden problem, posed by Erd\H{o}s and Ne\v{s}et\v{r}il in the late 1980s, an edge version of the degree--diameter problem. Our main result is that, for any graph of maximum degree…

Let $p_1,\ldots,p_n$ be a set of points in the unit square and let $T_1,\ldots,T_n$ be a set of $\delta$-tubes such that $T_j$ passes through $p_j$. We prove a lower bound for the number of incidences between the points and tubes under a…

Given $n$ non-vertical lines in 3-space, their vertical depth (above/below) relation can contain cycles. We show that the lines can be cut into $O(n^{3/2}\mathop{\mathrm{polylog}} n)$ pieces, such that the depth relation among these pieces…

We investigate the problem of encoding data into an $(n, t)$-break-resilient code ($(n, t)$-BRC), i.e., a collections of sequences of length~$n$ from which the original data can be reconstructed even if they are adversarially broken at up…

Genome rearrangements are events in which large blocks of DNA exchange pieces during evolution. The analysis of such events is a tool for understanding evolutionary genomics, based on finding the minimum number of rearrangements to…

We revisit the classic combinatorial pattern matching problem of finding a longest common subsequence (LCS). For strings $x$ and $y$ of length $n$, a textbook algorithm solves LCS in time $O(n^2)$, but although much effort has been spent,…

Since the introduction of retroactive data structures at SODA 2004, a major unsolved problem has been to bound the gap between the best partially retroactive data structure (where changes can be made to the past, but only the present can be…

New bounds on the number of similar or directly similar copies of a pattern within a finite subset of the line or the plane are proved. The number of equilateral triangles whose vertices all lie within an $n$-point subset of the plane is…

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

We consider the phylogenetic tree reconstruction problem with insertions and deletions (indels). Phylogenetic algorithms proceed under a model where sequences evolve down the model tree, and given sequences at the leaves, the problem is to…

The independent set reconfiguration problem asks whether one can transform one given independent set of a graph into another, by changing vertices one by one in such a way the intermediate sets remain independent. Extremal problems on…

Given a sequence of n numbers, the Maximum Consecutive Subsums Problem (MCSP) asks for the maximum consecutive sum of lengths l for each l = 1,...,n. No algorithm is known for this problem which is significantly better than the naive…

The Erd\H{o}s distance problem concerns the least number of distinct distances that can be determined by $N$ points in the plane. The integer lattice with $N$ points is known as \textit{near-optimal}, as it spans $\Theta(N/\sqrt{\log(N)})$…