Related papers: Some New Results on Sequence Reconstruction Proble…
In the \emph{trace reconstruction problem}, an unknown source string $x \in \{0,1\}^n$ is transmitted through a probabilistic \emph{deletion channel} which independently deletes each bit with some fixed probability $\delta$ and concatenates…
In distance query reconstruction, we wish to reconstruct the edge set of a hidden graph by asking as few distance queries as possible to an oracle. Given two vertices $u$ and $v$, the oracle returns the shortest path distance between $u$…
An order-$s$ Davenport-Schinzel sequence over an $n$-letter alphabet is one avoiding immediate repetitions and alternating subsequences with length $s+2$. The main problem is to determine the maximum length of such a sequence, as a function…
Learning to predict solutions to real-valued combinatorial graph problems promises efficient approximations. As demonstrated based on the NP-hard edge clique cover number, recurrent neural networks (RNNs) are particularly suited for this…
For nonnegative integers $n_2, n_3$ and $d$, let $N(n_2,n_3,d)$ denote the maximum cardinality of a code of length $n_2+n_3$, with $n_2$ binary coordinates and $n_3$ ternary coordinates (in this order) and with minimum distance at least…
This paper considers a binary channel with deletions and insertions, where each input bit is transformed in one of the following ways: it is deleted with probability d, or an extra bit is added after it with probability i, or it is…
Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…
The population recovery problem asks one to recover an unknown distribution over $n$-bit strings given access to independent noisy samples of strings drawn from the distribution. Recently, Ban et al. [BCF+19] studied the problem where the…
Quartet Reconstruction, the task of recovering a phylogenetic tree from smaller trees on four species called \textit{quartets}, is a well-studied problem in theoretical computer science with far-reaching connections to statistics, graph…
We propose a new deep recurrent neural network (RNN) architecture for sequential signal reconstruction. Our network is designed by unfolding the iterations of the proximal gradient method that solves the l1-l1 minimization problem. As such,…
Let us say that an element of a given family $\A$ of subsets of $\R^d$ can be reconstructed using $n$ test sets if there exist $T_1,...,T_n \subset \R^d$ such that whenever $A,B\in \A$ and the Lebesgue measures of $A \cap T_i$ and $B \cap…
An encoder observes a point pattern---a finite number of points in the interval $[0,T]$---which is to be described to a reconstructor using bits. Based on these bits, the reconstructor wishes to select a subset of $[0,T]$ that contains all…
In the trace reconstruction problem an unknown string ${\bf x}=(x_0,\dots,x_{n-1})\in\{0,1,...,m-1\}^n$ is observed through the deletion channel, which deletes each $x_k$ with a certain probability, yielding a contracted string…
We estimate the minimum number of distance queries that is sufficient to reconstruct the binomial random graph $G(n,p)$ with constant diameter with high probability. We get a tight (up to a constant factor) answer for all $p>n^{-1+o(1)}$…
Given an integer array $A[1..n]$, the Range Minimum Query problem (RMQ) asks to preprocess $A$ into a data structure, supporting RMQ queries: given $a,b\in [1,n]$, return the index $i\in[a,b]$ that minimizes $A[i]$, i.e.,…
The problem of reconstructing a sequence of independent and identically distributed symbols from a set of equal size, consecutive, fragments, as well as a dependent reference sequence, is considered. First, in the regime in which the…
We develop a systematic approach, based on convex programming and real analysis, for obtaining upper bounds on the capacity of the binary deletion channel and, more generally, channels with i.i.d. insertions and deletions. Other than the…
The condensed nearest neighbor (CNN) algorithm is a heuristic for reducing the number of prototypical points stored by a nearest neighbor classifier, while keeping the classification rule given by the reduced prototypical set consistent…
Negative orientable sequences, i.e. periodic sequences with elements from a finite alphabet of size at least three in which an n-tuple or the negative of its reverse appears at most once in a period of the sequence, were introduced by…
Let $L(n,d)$ denote the minimum possible number of leaves in a tree of order $n$ and diameter $d.$ In 1975 Lesniak gave the lower bound $B(n,d)=\lceil 2(n-1)/d\rceil$ for $L(n,d).$ When $d$ is even, $B(n,d)=L(n,d).$ But when $d$ is odd,…