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We consider an operator-based latent Markov representation of a stochastic nonlinear dynamical system, where the stochastic evolution of the latent state embedded in a reproducing kernel Hilbert space is described with the corresponding…

Machine Learning · Computer Science 2026-05-08 Naichang Ke , Ryogo Tanaka , Yoshinobu Kawahara

This work proposes a Bayesian inference method for the reduced-order modeling of time-dependent systems. Informed by the structure of the governing equations, the task of learning a reduced-order model from data is posed as a Bayesian…

Numerical Analysis · Mathematics 2023-01-18 Mengwu Guo , Shane A. McQuarrie , Karen E. Willcox

This manuscript studies nodal clustering in graphs having multivariate attributes at each node. The framework includes node-specific priors for low-dimensional representations, coupled with a neural decoder that bridges observed attributes…

In this paper, we study a model reduction technique for leader-follower networked multi-agent systems defined on weighted, undirected graphs with arbitrary linear multivariable agent dynamics. In the network graph of this network, nodes…

Optimization and Control · Mathematics 2016-10-11 Hidde-Jan Jongsma , Petar Mlinarić , Sara Grundel , Peter Benner , Harry L. Trentelman

This paper presents a novel clustering concept that is based on jointly learned nonlinear transforms (NTs) with priors on the information loss and the discrimination. We introduce a clustering principle that is based on evaluation of a…

Machine Learning · Computer Science 2019-01-31 Dimche Kostadinov , Behrooz Razeghi , Taras Holotyak , Slava Voloshynovskiy

Many stochastic processes in the physical and biological sciences can be modelled as Brownian dynamics with multiplicative noise. However, numerical integrators for these processes can lose accuracy or even fail to converge when the…

Numerical Analysis · Mathematics 2024-04-22 Dominic Phillips , Charles Matthews , Benedict Leimkuhler

Coarse-grained (CG) force field methods for molecular systems are a crucial tool to simulate large biological macromolecules and are therefore essential for characterisations of biomolecular systems. While state-of-the-art deep learning…

Molecular simulations produce very high-dimensional data-sets with millions of data points. As analysis methods are often unable to cope with so many dimensions, it is common to use dimensionality reduction and clustering methods to reach a…

Machine Learning · Statistics 2017-11-03 Stefan Doerr , Igor Ariz-Extreme , Matthew J. Harvey , Gianni De Fabritiis

This paper exposes a novel exploratory formalism, which end goal is the numerical simulation of the dynamics of a cloud of particles weakly or strongly coupled with a turbulent fluid. Giventhe large panel of expertise of the list of…

Analysis of PDEs · Mathematics 2019-10-21 Ludovic Goudenège , Adam Larat , Julie Llobell , Marc Massot , David Mercier , Olivier Thomine , Aymeric Vié

We propose a fast, optimization-free method for learning the transition operators of high-dimensional Markov processes. The central idea is to perform a Galerkin projection of the transition operator to a suitable set of low-order bases…

Numerical Analysis · Mathematics 2025-12-22 Yuehaw Khoo , Yuguan Wang , Siyao Yang

We develop an effective nonhierarchical data clustering method using an analogy to the dynamic coarse graining of a stochastic system. Analyzing the eigensystem of an interitem transition matrix identifies fuzzy clusters corresponding to…

Data Analysis, Statistics and Probability · Physics 2009-11-10 Daniel Korenblum , David Shalloway

In this work we are interested in identifying clusters of "positional equivalent" actors, i.e. actors who play a similar role in a system. In particular, we analyze weighted bipartite networks that describes the relationships between actors…

Data Analysis, Statistics and Probability · Physics 2015-06-19 Alessandro Chessa , Irene Crimaldi , Massimo Riccaboni , Luca Trapin

Spectral-based subspace clustering methods have proved successful in many challenging applications such as gene sequencing, image recognition, and motion segmentation. In this work, we first propose a novel spectral-based subspace…

Machine Learning · Statistics 2021-06-09 Hankui Peng , Nicos G. Pavlidis

The clustering of bounded data presents unique challenges in statistical analysis due to the constraints imposed on the data values. This paper introduces a novel method for model-based clustering specifically designed for bounded data.…

Methodology · Statistics 2025-05-16 Luca Scrucca

Coarse-grained molecular dynamics often sacrifices accuracy and transferability for computational efficiency, but the use of machine learned potentials is helping coarse-grained models attain performance on par with atomistic molecular…

Chemical Physics · Physics 2026-02-17 Abigail Park , Shriram Chennakesavalu , Grant M. Rotskoff

Industrial transfer learning increases the adaptability of deep learning algorithms towards heterogenous and dynamic industrial use cases without high manual efforts. The appropriate selection of what to transfer can vastly improve a…

Machine Learning · Computer Science 2022-04-05 Benjamin Maschler , Tim Knodel , Michael Weyrich

We propose and illustrate an approach to coarse-graining the dynamics of evolving networks (networks whose connectivity changes dynamically). The approach is based on the equation-free framework: short bursts of detailed network evolution…

Social and Information Networks · Computer Science 2012-02-28 Katherine A. Bold , Karthikeyan Rajendran , Balázs Ráth , Ioannis G. Kevrekidis

Big data often has emergent structure that exists at multiple levels of abstraction, which are useful for characterizing complex interactions and dynamics of the observations. Here, we consider multiple levels of abstraction via a…

Derivation of reduced order representations of dynamical systems requires the modeling of the truncated dynamics on the retained dynamics. In its most general form, this so-called closure model has to account for memory effects. In this…

Dynamical Systems · Mathematics 2020-06-12 Shaowu Pan , Karthik Duraisamy

A given set of data-points in some feature space may be associated with a Schrodinger equation whose potential is determined by the data. This is known to lead to good clustering solutions. Here we extend this approach into a full-fledged…

Data Analysis, Statistics and Probability · Physics 2010-02-16 Marvin Weinstein , David Horn