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We use Topological Data Analysis tools for studying the inner organization of cells in segmented images of epithelial tissues. More specifically, for each segmented image, we compute different persistence barcodes, which codify lifetime of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-11 N. Atienza , M. J. Jimenez , M. Soriano-Trigueros

We use persistent homology to build a quantitative understanding of large complex systems that are driven far-from-equilibrium; in particular, we analyze image time series of flow field patterns from numerical simulations of two important…

Popular network models such as the mixed membership and standard stochastic block model are known to exhibit distinct geometric structure when embedded into $\mathbb{R}^{d}$ using spectral methods. The resulting point cloud concentrates…

Statistics Theory · Mathematics 2021-10-15 Vinesh Solanki , Patrick Rubin-Delanchy , Ian Gallagher

Topological data analysis combines machine learning with methods from algebraic topology. Persistent homology, a method to characterize topological features occurring in data at multiple scales is of particular interest. A major obstacle to…

Algebraic Topology · Mathematics 2019-04-25 Nello Blaser , Morten Brun

The recurrent nova and symbiotic binary RS Oph erupted again in August 2021 for its eighth known outburst. As part of a multi-epoch and frequency campaign, we observed RS Oph 34 days after the outburst at 5 GHz with the European VLBI…

Solar and Stellar Astrophysics · Physics 2022-10-05 U. Munari , M. Giroletti , B. Marcote , T. J. O'Brien , P. Veres , J. Yang , D. R. A. Williams , P. Woudt

The recurrent and symbiotic nova RS Ophiuchi (RSOph) underwent a new outburst phase during August 2021, about 15 years after the last event that occurred in 2006. This outburst represents the first nova event ever detected at very high…

High Energy Astrophysical Phenomena · Physics 2024-12-04 R. Lico , M. Giroletti , U. Munari , T. J. O'Brien , B. Marcote , D. R. A. Williams , J. Yang , P. Veres , P. Woudt

Time-delay embedding is a fundamental technique in Topological Data Analysis (TDA) for reconstructing the phase space dynamics of time-series data. Persistent homology effectively identifies global topological features, such as loops…

Statistics Theory · Mathematics 2026-04-21 Donghyun Park , Junhyun An , Taehyoung Kim , Jisu Kim

A suitable feature representation that can both preserve the data intrinsic information and reduce data complexity and dimensionality is key to the performance of machine learning models. Deeply rooted in algebraic topology, persistent…

Algebraic Topology · Mathematics 2018-11-02 Chi Seng Pun , Kelin Xia , Si Xian Lee

Following the recent outburst of the recurrent nova RS Oph on 2006 Feb 12, we measured its near-infrared size using the IOTA, Keck, and PTI Interferometers at multiple epochs. The characteristic size of ~3 milliarcseconds hardly changed…

Persistent homology, a method from topological data analysis, extracts robust, multi-scale features from data. It produces stable representations of time series by applying varying thresholds to their values (a process known as a…

Computation and Language · Computer Science 2026-04-24 Marius Huber , David R. Reich , Lena A. Jäger

Topological data analysis (TDA) is a rapidly developing collection of methods for studying the shape of point cloud and other data types. One popular approach, designed to be robust to noise and outliers, is to first use a smoothing…

Methodology · Statistics 2017-12-27 Chul Moon , Noah Giansiracusa , Nicole A. Lazar

Novae were discovered to emit transient gamma rays during the period of several days to a few weeks after initial explosion, indicating presence of acceleration processes of particles in their expanding shells. In the case of recurrent…

High Energy Astrophysical Phenomena · Physics 2023-03-29 W. Bednarek , J. Sitarek

The Vietoris-Rips filtration for an $n$-point metric space is a sequence of large simplicial complexes adding a topological structure to the otherwise disconnected space. The persistent homology is a key tool in topological data analysis…

Computational Geometry · Computer Science 2017-09-19 Vitaliy Kurlin

Persistent homology is one of the most popular methods in topological data analysis. An initial step in its use involves constructing a nested sequence of simplicial complexes. There is an abundance of different complexes to choose from,…

Algebraic Topology · Mathematics 2026-01-16 Niklas Canova , Sara Kališnik , Aaron Moser , Bastian Rieck , Ana Žegarac

Persistent Homology (PH) has been successfully used to train networks to detect curvilinear structures and to improve the topological quality of their results. However, existing methods are very global and ignore the location of topological…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Doruk Oner , Adélie Garin , Mateusz Koziński , Kathryn Hess , Pascal Fua

We introduce a consistent estimator for the homology (an algebraic structure representing connected components and cycles) of level sets of both density and regression functions. Our method is based on kernel estimation. We apply this…

Statistics Theory · Mathematics 2016-09-30 Omer Bobrowski , Sayan Mukherjee , Jonathan E. Taylor

This paper contains an expository account of persistent homology and its usefulness for topological data analysis. An alternative foundation for level-set persistence is presented using sheaves and cosheaves.

Algebraic Topology · Mathematics 2015-03-05 Justin Curry

The discovery of spatio-temporal dependencies within urban road networks that cause Recurrent Congestion (RC) patterns is crucial for numerous real-world applications, including urban planning and scheduling of public transportation…

Machine Learning · Computer Science 2021-07-21 Nicolas Tempelmeier , Udo Feuerhake , Oskar Wage , Elena Demidova

The study of phase transitions using data-driven approaches is challenging, especially when little prior knowledge of the system is available. Topological data analysis is an emerging framework for characterizing the shape of data and has…

Statistical Mechanics · Physics 2021-05-26 Quoc Hoan Tran , Mark Chen , Yoshihiko Hasegawa

In this study, we introduce novel methodologies designed to adapt original data in response to the dynamics of persistence diagrams along Wasserstein gradient flows. Our research focuses on the development of algorithms that translate…

Algebraic Topology · Mathematics 2024-12-06 Minghua Wang , Jinhui Xu