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Understanding how individuals navigate mental health challenges over time is critical yet methodologically challenging. Traditional approaches analyze community-level snapshots, failing to capture dynamic individual recovery trajectories.…

Human-Computer Interaction · Computer Science 2026-03-02 Joydeep Chandra , Satyam Kumar Navneet , Yong Zhang

Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

Biomolecules · Quantitative Biology 2019-03-27 David Bramer , Guo-Wei Wei

Novae, characterized by sudden brightening in binary star systems, are categorized into classical novae (CNe) and recurrent novae (RNe) based on their recurrence timescales. However, identifying RNe, which occur within 100 years, presents…

Solar and Stellar Astrophysics · Physics 2025-09-08 Rajarshi Barman , Nirupam Roy

A central problem in data-driven scientific inquiry is how to interpret structure in noisy, high-dimensional data. Topological data analysis (TDA) provides a solution via persistent homology, which encodes features of interest as…

Algebraic Topology · Mathematics 2026-02-04 Christian Lentz , Gregory Henselman-Petrusek , Lori Ziegelmeier

Persistent homology is a method from computational algebraic topology that can be used to study the "shape" of data. We illustrate two filtrations --- the weight rank clique filtration and the Vietoris--Rips (VR) filtration --- that are…

Computational Geometry · Computer Science 2016-10-30 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

V4444 Sgr (Nova Sgr 1999) has been recently suggested to be a possible recurrent nova based on the detection of the preexisting dust, which may have been formed in a previous outburst. We examined this possibility using the available…

Astrophysics · Physics 2015-06-24 T. Kato , H. Yamaoka , S. Kiyota

Persistent homology (PH) encodes global information, such as cycles, and is thus increasingly integrated into graph neural networks (GNNs). PH methods in GNNs typically traverse an increasing sequence of subgraphs. In this work, we first…

Machine Learning · Computer Science 2026-05-15 Mattie Ji , Indradyumna Roy , Vikas Garg

Persistent homology is a relatively new tool often used for \emph{qualitative} analysis of intrinsic topological features in images and data originated from scientific and engineering applications. In this paper, we report novel…

Biomolecules · Quantitative Biology 2014-12-09 Kelin Xia , Xin Feng , Yiying Tong , Guo Wei We

Hyperuniformity, the suppression of density fluctuations at large length scales, is observed across a wide variety of domains, from cosmology to condensed matter and biological systems. Although the standard definition of hyperuniformity…

Statistical Mechanics · Physics 2024-05-07 Marco Salvalaglio , Dominic J. Skinner , Jörn Dunkel , Axel Voigt

Persistence homology is a tool used to measure topological features that are present in data sets and functions. Persistence pairs births and deaths of these features as we iterate through the sublevel sets of the data or function of…

Computational Geometry · Computer Science 2010-02-10 Brittany Terese Fasy

Persistent homology is a mathematical tool used for studying the shape of data by extracting its topological features. It has gained popularity in network science due to its applicability in various network mining problems, including…

Algebraic Topology · Mathematics 2023-06-21 Mehmet Emin Aktas , Thu Nguyen , Rakin Riza , Muhammad Ifte Islam , Esra Akbas

This paper is a cursory study on how topological features are preserved within the internal representations of neural network layers. Using techniques from topological data analysis, namely persistent homology, the topological features of a…

Machine Learning · Computer Science 2022-08-16 Archie Shahidullah

Single-parameter persistent homology, a key tool in topological data analysis, has been widely applied to data problems along with statistical techniques that quantify the significance of the results. In contrast, statistical techniques for…

Algebraic Topology · Mathematics 2020-12-14 Matthew Wright , Xiaojun Zheng

This work is dedicated to the topological analysis of complex transitional networks for dynamic state detection. Transitional networks are formed from time series data and they leverage graph theory tools to reveal information about the…

Machine Learning · Statistics 2023-08-08 Audun D. Myers , Max M. Chumley , Firas A. Khasawneh , Elizabeth Munch

In this paper, the prediction capabilities of recurrent neural networks are assessed in the low-order model of near-wall turbulence by Moehlis {\it et al.} (New J. Phys. {\bf 6}, 56, 2004). Our results show that it is possible to obtain…

Understanding the decision-making processes of large language models is critical given their widespread applications. To achieve this, we aim to connect a formal mathematical framework - zigzag persistence from topological data analysis -…

Computation and Language · Computer Science 2025-06-16 Yuri Gardinazzi , Karthik Viswanathan , Giada Panerai , Alessio Ansuini , Alberto Cazzaniga , Matteo Biagetti

Accurate short-term streamflow and flood forecasting are critical for mitigating river flood impacts, especially given the increasing climate variability. Machine learning-based streamflow forecasting relies on large streamflow datasets…

Artificial Intelligence · Computer Science 2024-12-09 Xiyu Pan , Neda Mohammadi , John E. Taylor

Recurrent neural networks (RNNs) are popular machine learning tools for modeling and forecasting sequential data and for inferring dynamical systems (DS) from observed time series. Concepts from DS theory (DST) have variously been used to…

Machine Learning · Computer Science 2023-10-27 Lukas Eisenmann , Zahra Monfared , Niclas Alexander Göring , Daniel Durstewitz

High-quality training data is the foundation of machine learning and artificial intelligence, shaping how models learn and perform. Although much is known about what types of data are effective for training, the impact of the data's…

Machine Learning · Computer Science 2025-10-21 Yang Ba , Mohammad Sadeq Abolhasani , Rong Pan

Topological loss based on persistent homology has shown promise in various applications. A topological loss enforces the model to achieve certain desired topological property. Despite its empirical success, less is known about the…

Machine Learning · Computer Science 2022-06-14 Yikai Zhang , Jiachen Yao , Yusu Wang , Chao Chen