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Structural biology relies on accurate three-dimensional biomolecular structures to advance our understanding of biological functions, disease mechanisms, and therapeutics. While recent advances in deep learning have enabled the development…

Biomolecules · Quantitative Biology 2025-04-02 Yizhen Luo , Jiashuo Wang , Siqi Fan , Zaiqing Nie

Radiology report generation, as a key step in medical image analysis, is critical to the quantitative analysis of clinically informed decision-making levels. However, complex and diverse radiology reports with cross-source heterogeneity…

Accurate and robust segmentation of abdominal organs on CT is essential for many clinical applications such as computer-aided diagnosis and computer-aided surgery. But this task is challenging due to the weak boundaries of organs, the…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Yan Wang , Yuyin Zhou , Wei Shen , Seyoun Park , Elliot K. Fishman , Alan L. Yuille

This study aimed to enhance disease classification accuracy from retinal fundus images by integrating fine-grained image features and global textual context using a novel multimodal deep learning architecture. Existing multimodal large…

Computer Vision and Pattern Recognition · Computer Science 2025-09-29 Jason Jordan , Mohammadreza Akbari Lor , Peter Koulen , Mei-Ling Shyu , Shu-Ching Chen

Automatic multi-organ segmentation of the dual energy computed tomography (DECT) data can be beneficial for biomedical research and clinical applications. However, it is a challenging task. Recent advances in deep learning showed the…

Computer Vision and Pattern Recognition · Computer Science 2017-10-17 Shuqing Chen , Holger Roth , Sabrina Dorn , Matthias May , Alexander Cavallaro , Michael M. Lell , Marc Kachelrieß , Hirohisa Oda , Kensaku Mori , Andreas Maier

3D image segmentation plays an important role in biomedical image analysis. Many 2D and 3D deep learning models have achieved state-of-the-art segmentation performance on 3D biomedical image datasets. Yet, 2D and 3D models have their own…

Computer Vision and Pattern Recognition · Computer Science 2018-12-11 Hao Zheng , Yizhe Zhang , Lin Yang , Peixian Liang , Zhuo Zhao , Chaoli Wang , Danny Z. Chen

Radiologic diagnostic errors-under-reading errors, inattentional blindness, and communication failures-remain prevalent in clinical practice. These issues often stem from missed localized abnormalities, limited global context, and…

Computer Vision and Pattern Recognition · Computer Science 2025-09-05 Yuheng Li , Yenho Chen , Yuxiang Lai , Jike Zhong , Vanessa Wildman , Xiaofeng Yang

The federated learning paradigm is wellsuited for the field of medical image analysis, as it can effectively cope with machine learning on isolated multicenter data while protecting the privacy of participating parties. However, current…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Zhekai Zhou , Guibo Luo , Mingzhi Chen , Zhenyu Weng , Yuesheng Zhu

Accurate medical image segmentation is essential for clinical diagnosis and treatment planning. While recent interactive foundation models (e.g., nnInteractive) enhance generalization through large-scale multimodal pretraining, they still…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Ziyu Zhang , Yi Yu , Simeng Zhu , Ahmed Aly , Yunhe Gao , Ning Gu , Yuan Xue

Multi-organ segmentation in whole-body computed tomography (CT) is a constant pre-processing step which finds its application in organ-specific image retrieval, radiotherapy planning, and interventional image analysis. We address this…

Computer Vision and Pattern Recognition · Computer Science 2019-08-15 Fernando Navarro , Suprosanna Shit , Ivan Ezhov , Johannes Paetzold , Andrei Gafita , Jan Peeken , Stephanie Combs , Bjoern Menze

Contemporary interventional imaging lacks the real-time 3D guidance needed for the precise localization of mobile thoracic targets. While Cone-Beam CT (CBCT) provides 3D data, it is often too slow for dynamic motion tracking. Deep learning…

Medical Physics · Physics 2025-11-19 Fawazilla Utomo , Tess Reynolds , Nicholas Hindley

In medical image analysis, Federated Learning (FL) stands out as a key technology that enables privacy-preserved, decentralized data processing, crucial for handling sensitive medical data. Currently, most FL models employ random…

Computer Vision and Pattern Recognition · Computer Science 2023-11-28 Ming Li , Guang Yang

Current medical vision-language models (VLMs) process volumetric brain MRI using 2D slice-based approximations, fragmenting the spatial context required for accurate neuroradiological interpretation. We developed \textbf{Brain3D}, a staged…

Computer Vision and Pattern Recognition · Computer Science 2026-02-26 Mariano Barone , Francesco Di Serio , Giuseppe Riccio , Antonio Romano , Marco Postiglione , Antonino Ferraro , Vincenzo Moscato

Medical image segmentation has achieved remarkable success through the continuous advancement of UNet-based and Transformer-based foundation backbones. However, clinical diagnosis in the real world often requires integrating domain…

Computer Vision and Pattern Recognition · Computer Science 2025-04-11 Siyuan Dai , Kai Ye , Guodong Liu , Haoteng Tang , Liang Zhan

Existing foundation models (FMs) in the medical domain often require extensive fine-tuning or rely on training resource-intensive decoders, while many existing encoders are pretrained with objectives biased toward specific tasks. This…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Tim Veenboer , George Yiasemis , Eric Marcus , Vivien Van Veldhuizen , Cees G. M. Snoek , Jonas Teuwen , Kevin B. W. Groot Lipman

Foundation segmentation models such as SAM and SAM-2 perform well on natural images but struggle with brain MRIs where structures like the caudate and thalamus lack sharp boundaries and have low contrast. Rather than fine tune these models…

Image and Video Processing · Electrical Eng. & Systems 2025-11-26 Keith Moore

Existing medical imaging datasets for abdominal CT often lack three-dimensional annotations, multi-organ coverage, or precise lesion-to-organ associations, hindering robust representation learning and clinical applications. To address this…

Image and Video Processing · Electrical Eng. & Systems 2026-02-16 Mehran Advand , Zahra Dehghanian , Navid Faraji , Reza Barati , Seyed Amir Ahmad Safavi-Naini , Hamid R. Rabiee

Automated patient positioning can improve radiology workflow efficiency by reducing the time required for manual table adjustments and scout-based scan planning. We propose a learning-based framework that predicts 3D organ locations and…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Eytan Kats , Kai Geissler , Daniel Mensing , Julien Senegas , Jochen G. Hirsch , Stefan Heldman , Mattias P. Heinrich

Accurate prediction of malignancy in renal tumors is crucial for informing clinical decisions and optimizing treatment strategies. However, existing imaging modalities lack the necessary accuracy to reliably predict malignancy before…

Computer Vision and Pattern Recognition · Computer Science 2026-02-27 Zhengkang Fan , Chengkun Sun , Russell Terry , Jie Xu , Longin Jan Latecki

Recent advancements in biomedical image analysis have been significantly driven by the Segment Anything Model (SAM). This transformative technology, originally developed for general-purpose computer vision, has found rapid application in…

Computer Vision and Pattern Recognition · Computer Science 2024-01-17 Ho Hin Lee , Yu Gu , Theodore Zhao , Yanbo Xu , Jianwei Yang , Naoto Usuyama , Cliff Wong , Mu Wei , Bennett A. Landman , Yuankai Huo , Alberto Santamaria-Pang , Hoifung Poon