Related papers: The largest common subtree of two random trees
The structure of an evolving network contains information about its past. Extracting this information efficiently, however, is, in general, a difficult challenge. We formulate a fast and efficient method to estimate the most likely history…
A spanning tree of a graph $G$ is a connected acyclic spanning subgraph of $G$. We consider enumeration of spanning trees when $G$ is a $2$-tree, meaning that $G$ is obtained from one edge by iteratively adding a vertex whose neighborhood…
Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…
Minimal spanning trees on infinite vertex sets are investigated. A criterion for minimality of a spanning tree having a finite length is obtained, which generalizes the corresponding classical result for finite sets. It is given an analytic…
Finding interactions between variables in large and high-dimensional datasets is often a serious computational challenge. Most approaches build up interaction sets incrementally, adding variables in a greedy fashion. The drawback is that…
We investigate the order of the $r$-th, $1\le r < +\infty$, central moment of the length of the longest common subsequence of two independent random words of size $n$ whose letters are identically distributed and independently drawn from a…
Between the leaves and the nodes of a complete binary tree, a separate parent-child-sister hierarchy is employed independent of the parent-child-sister hierarchy used for the rest of the tree. Two different versions of such a local…
The metric dimension of a graph $G$ is the minimal size of a subset $R$ of vertices of $G$ that, upon reporting their graph distance from a distingished (source) vertex $v^\star$, enable unique identification of the source vertex $v^\star$…
Let $P$ be a generic set of $n$ points in the plane, and let $P=R\cup B$ be a coloring of $P$ in two colors. We are interested in the number of crossings between the minimum spanning trees (MSTs) of $R$ and $B$, denoted by $\crossAB(R,B)$.…
The Longest Common Substring (LCS) and Longest Palindromic Substring (LPS) are classical problems in computer science, representing fundamental challenges in string processing. Both problems can be solved in linear time using a classical…
The uniform spanning forest (USF) in Z^d is the weak limit of random, uniformly chosen, spanning trees in [-n,n]^d. Pemantle proved that the USF consists a.s. of a single tree if and only if d <= 4. We prove that any two components of the…
A tree with at most $k$ leaves is called a $k$-ended tree. A spanning 2-ended tree is a Hamilton path. A Hamilton cycle can be considered as a spanning 1-ended tree. The earliest result concerning spanning trees with few leaves states that…
In this paper we consider two aspects of the inverse problem of how to construct merge trees realizing a given barcode. Much of our investigation exploits a recently discovered connection between the symmetric group and barcodes in general…
A widely used method for determining the similarity of two labeled trees is to compute a maximum agreement subtree of the two trees. Previous work on this similarity measure is only concerned with the comparison of labeled trees of two…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
The Yule-Harding-Kingman (YHK) model and the proportional to distinguishable arrangements (PDA) model are two binary tree generating models that are widely used in evolutionary biology. Understanding the distributions of clade sizes under…
A little over 25 years ago Pemantle pioneered the study of the contact process on trees, and showed that the critical values $\lambda_1$ and $\lambda_2$ for global and local survival were different. Here, we will consider the case of trees…
We consider the set of random Bienaym\'e-Galton-Watson trees with a bounded number of offspring and bounded number of generations as a statistical mechanics model: a random tree is a rooted subtree of the maximal tree; the spin at a given…
Consider~\(n\) nodes distributed independently across~\(N\) cities contained with the unit square~\(S\) according to a distribution~\(f.\) Each city is modelled as an~\(r_n \times r_n\) square contained within~\(S\) and~\(MSTC_n\) denotes…
Consider the edge-deletion process in which the edges of some finite tree T are removed one after the other in the uniform random order. Roughly speaking, the cut-tree then describes the genealogy of connected components appearing in this…