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Visualizing graphs using virtual physical models is probably the most heavily used technique for drawing graphs in practice. There are many algorithms that are efficient and produce high-quality layouts. If one requires that the layout also…

Discrete Mathematics · Computer Science 2013-09-09 Emden R. Gansner , Yifan Hu , Shankar Krishnan

This work introduces a highly-scalable spectral graph densification framework (SGL) for learning resistor networks with linear measurements, such as node voltages and currents. We show that the proposed graph learning approach is equivalent…

Machine Learning · Computer Science 2023-02-10 Ying Zhang , Zhiqiang Zhao , Zhuo Feng

Resistance distance computation is a fundamental problem in graph analysis, yet existing random walk-based methods are limited to approximate solutions and suffer from poor efficiency on small-treewidth graphs (e.g., road networks). In…

Databases · Computer Science 2025-09-08 Meihao Liao , Yueyang Pan , Rong-Hua Li , Guoren Wang

In this study, we focus on the graph representation learning (a.k.a. network embedding) in attributed graphs. Different from existing embedding methods that treat the incorporation of graph structure and semantic as the simple combination…

Social and Information Networks · Computer Science 2023-05-12 Meng Qin

Graph sketching has emerged as a powerful technique for processing massive graphs that change over time (i.e., are presented as a dynamic stream of edge updates) over the past few years, starting with the work of Ahn, Guha and McGregor…

Data Structures and Algorithms · Computer Science 2019-03-29 Michael Kapralov , Aida Mousavifar , Cameron Musco , Christopher Musco , Navid Nouri

Graph Visualization, also known as Graph Drawing, aims to find geometric embeddings of graphs that optimize certain criteria. Stress is a widely used metric; stress is minimized when every pair of nodes is positioned at their shortest path…

Computational Geometry · Computer Science 2024-02-13 Florian Grötschla , Joël Mathys , Robert Veres , Roger Wattenhofer

In designing and applying graph neural networks, we often fall into some optimization pitfalls, the most deceptive of which is that we can only build a deep model by solving over-smoothing. The fundamental reason is that we do not…

Machine Learning · Computer Science 2022-11-22 Xue Li , Yuanzhi Cheng

Generating computational anatomical models of cerebrovascular networks is vital for improving clinical practice and understanding brain oxygen transport. This is achieved by extracting graph-based representations based on pre-mapping of…

Quantitative Methods · Quantitative Biology 2019-12-23 Rafat Damseh , Patrick Delafontaine-Martel , Philippe Pouliot , Farida Cheriet , Frederic Lesage

This work addresses the problem of simulating Gaussian random fields that are continuously indexed over a class of metric graphs, termed graphs with Euclidean edges, being more general and flexible than linear networks. We introduce three…

Statistics Theory · Mathematics 2024-04-29 Alfredo Alegría , Xavier Emery , Tobia Filosi , Emilio Porcu

In this paper we give a survey of methods used to calculate values of resistance distance (also known as effective resistance) in graphs. Resistance distance has played a prominent role not only in circuit theory and chemistry, but also in…

Combinatorics · Mathematics 2021-09-15 E. J. Evans , A. E. Francis

Graph embedding has recently gained momentum in the research community, in particular after the introduction of random walk and neural network based approaches. However, most of the embedding approaches focus on representing the local…

Machine Learning · Computer Science 2020-02-19 Joerg Schloetterer , Martin Wehking , Fatemeh Salehi Rizi , Michael Granitzer

We present Graph Random Neural Features (GRNF), a novel embedding method from graph-structured data to real vectors based on a family of graph neural networks. The embedding naturally deals with graph isomorphism and preserves the metric…

Machine Learning · Computer Science 2020-06-03 Daniele Zambon , Cesare Alippi , Lorenzo Livi

We present a novel framework based on optimal transport for the challenging problem of comparing graphs. Specifically, we exploit the probabilistic distribution of smooth graph signals defined with respect to the graph topology. This allows…

Machine Learning · Computer Science 2019-12-09 Hermina Petric Maretic , Mireille EL Gheche , Giovanni Chierchia , Pascal Frossard

Sampling methods (e.g., node-wise, layer-wise, or subgraph) has become an indispensable strategy to speed up training large-scale Graph Neural Networks (GNNs). However, existing sampling methods are mostly based on the graph structural…

Machine Learning · Computer Science 2021-09-07 Weilin Cong , Rana Forsati , Mahmut Kandemir , Mehrdad Mahdavi

Force-directed layout methods constitute the most common approach to draw general graphs. Among them, stress minimization produces layouts of comparatively high quality but also imposes comparatively high computational demands. We propose a…

Computational Geometry · Computer Science 2016-11-29 Mark Ortmann , Mirza Klimenta , Ulrik Brandes

Effective resistance (ER) is an attractive way to interrogate the structure of graphs. It is an alternative to computing the eigen-vectors of the graph Laplacian. Graph laplacians are used to find low dimensional structures in high…

Machine Learning · Computer Science 2023-06-30 Robi Bhattacharjee , Alex Cloninger , Yoav Freund , Andreas Oslandsbotn

Due to their flexibility to represent almost any kind of relational data, graph-based models have enjoyed a tremendous success over the past decades. While graphs are inherently only combinatorial objects, however, many prominent analysis…

Social and Information Networks · Computer Science 2024-03-27 Michaël Fanuel , Antoine Aspeel , Michael T. Schaub , Jean-Charles Delvenne

We introduce an unsupervised graph embedding that trades off local node similarity and connectivity, and global structure. The embedding is based on a generalized graph Laplacian, whose eigenvectors compactly capture both network structure…

Machine Learning · Computer Science 2020-10-01 Shay Deutsch , Stefano Soatto

A planar orthogonal drawing {\Gamma} of a connected planar graph G is a geometric representation of G such that the vertices are drawn as distinct points of the plane, the edges are drawn as chains of horizontal and vertical segments, and…

Computational Geometry · Computer Science 2025-02-06 Walter Didimo , Giuseppe Liotta , Giacomo Ortali , Maurizio Patrignani

Drawing large graphs appropriately is an important step for the visual analysis of data from real-world networks. Here we present a novel multilevel algorithm to compute a graph layout with respect to a recently proposed metric that…

Data Structures and Algorithms · Computer Science 2015-08-11 Henning Meyerhenke , Martin Nöllenburg , Christian Schulz