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Nonlocality is important in realistic mathematical models of physical and biological systems when local models fail to capture the essential dynamics and interactions that occur over a range of distances. This review illustrates different…

Quantitative Methods · Quantitative Biology 2025-02-14 Swadesh Pal , Roderick Melnik

To successfully navigate chemical gradients, microorganisms need to predict how the ligand concentration changes in space. Due to their limited size, they do not take a spatial derivative over their body length but rather a temporal…

Molecular Networks · Quantitative Biology 2024-02-09 Age J. Tjalma , Pieter Rein ten Wolde

A recurrent idea in the study of complex systems is that optimal information processing is to be found near bifurcation points or phase transitions. However, this heuristic hypothesis has few (if any) concrete realizations where a standard…

Neurons and Cognition · Quantitative Biology 2007-05-23 Osame Kinouchi , Mauro Copelli

During development, cell fates are determined through a combination of intracellular transcriptional regulations and extracellular signaling. As a result, spatial patterns of different cell types arise. We investigate the decision between…

Cell Behavior · Quantitative Biology 2021-11-03 Simon Schardt , Sabine C. Fischer

This work proposes to combine neural networks with the compositional hierarchy of human bodies for efficient and complete human parsing. We formulate the approach as a neural information fusion framework. Our model assembles the information…

Computer Vision and Pattern Recognition · Computer Science 2020-01-22 Wenguan Wang , Zhijie Zhang , Siyuan Qi , Jianbing Shen , Yanwei Pang , Ling Shao

The proper functioning of multicellular organisms requires the robust establishment of precise proportions between distinct cell-types. This developmental differentiation process typically involves intracellular regulatory and stochastic…

Cell Behavior · Quantitative Biology 2016-06-22 Benjamin Pfeuty , Kunihiko Kaneko

Attentional mechanisms are order-invariant. Positional encoding is a crucial component to allow attention-based deep model architectures such as Transformer to address sequences or images where the position of information matters. In this…

Machine Learning · Computer Science 2021-11-10 Yang Li , Si Si , Gang Li , Cho-Jui Hsieh , Samy Bengio

Neural networks rely on learning synaptic weights. However, this overlooks other neural parameters that can also be learned and may be utilized by the brain. One such parameter is the delay: the brain exhibits complex temporal dynamics with…

Neural and Evolutionary Computing · Computer Science 2025-11-03 Pengfei Sun , Jascha Achterberg , Zhe Su , Dan F. M. Goodman , Danyal Akarca

In humans and other animals, category learning enhances discrimination between stimuli close to the category boundary. This phenomenon, called categorical perception, was also empirically observed in artificial neural networks trained on…

Machine Learning · Computer Science 2025-11-27 Laurent Bonnasse-Gahot , Jean-Pierre Nadal

Studies investigating neural information processing often implicitly ask both, which processing strategy out of several alternatives is used and how this strategy is implemented in neural dynamics. A prime example are studies on predictive…

We present a new algorithm for the design of the connection region between different lattice materials. We solve a Stokes-type topology optimization problem on a narrow morphing region to smoothly connect two different unit cells. The…

Computational Engineering, Finance, and Science · Computer Science 2022-06-03 Nicola Ferro , Simona Perotto , Matteo Gavazzoni

Memory-based meta-learning is a technique for approximating Bayes-optimal predictors. Under fairly general conditions, minimizing sequential prediction error, measured by the log loss, leads to implicit meta-learning. The goal of this work…

Cells self-organize into functional, ordered structures during tissue morphogenesis, a process that is evocative of colloidal self-assembly into engineered soft materials. Understanding how inter-cellular mechanical interactions may drive…

Primary visual cortex (V1) is the first stage of cortical image processing, and a major effort in systems neuroscience is devoted to understanding how it encodes information about visual stimuli. Within V1, many neurons respond selectively…

Neurons and Cognition · Quantitative Biology 2017-06-21 William F. Kindel , Elijah D. Christensen , Joel Zylberberg

The diagnosis of cyber-physical systems aims to detect faulty behaviour, its root cause and a mitigation or even prevention policy. Therefore, diagnosis relies on a representation of the system's functional and faulty behaviour combined…

Machine Learning · Computer Science 2021-10-13 Nicolas Olivain , Philipp Tiefenbacher , Jens Kohl

Grid cells in the entorhinal cortex encode the position of an animal in its environment using spatially periodic tuning curves of varying periodicity. Recent experiments established that these cells are functionally organized in discrete…

Neurons and Cognition · Quantitative Biology 2016-01-13 Noga Weiss Mosheiff , Haggai Agmon , Avraham Moriel , Yoram Burak

Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological…

Cell Behavior · Quantitative Biology 2019-11-04 Gabriele Micali , Robert G. Endres

Cells need to reliably sense external ligand concentrations to achieve various biological functions such as chemotaxis or signaling. The molecular recognition of ligands by surface receptors is degenerate in many systems leading to…

Following the recent success of word embeddings, it has been argued that there is no such thing as an ideal representation for words, as different models tend to capture divergent and often mutually incompatible aspects like…

Computation and Language · Computer Science 2021-12-28 Mikel Artetxe , Gorka Labaka , Iñigo Lopez-Gazpio , Eneko Agirre

Recent advances in electronics are enabling substantial processing to be performed at each node (robots, sensors) of a networked system. Local processing enables data compression and may mitigate measurement noise, but it is still slower…

Optimization and Control · Mathematics 2025-03-04 Luca Ballotta , Luca Schenato , Luca Carlone