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The richness of many complex systems stems from the interactions among their components. The higher-order nature of these interactions, involving many units at once, and their temporal dynamics constitute crucial properties that shape the…

Physics and Society · Physics 2024-07-29 Marco Mancastroppa , Iacopo Iacopini , Giovanni Petri , Alain Barrat

Learning the unique directed acyclic graph corresponding to an unknown causal model is a challenging task. Methods based on functional causal models can identify a unique graph, but either suffer from the curse of dimensionality or impose…

Machine Learning · Computer Science 2025-01-14 Sujai Hiremath , Jacqueline R. M. A. Maasch , Mengxiao Gao , Promit Ghosal , Kyra Gan

With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…

Databases · Computer Science 2013-08-16 Wajdi Dhifli , Mohamed Moussaoui , Rabie Saidi , Engelbert Mephu Nguifo

We revisit the recent reformulation of the holographic prescription to compute entanglement entropy in terms of a convex optimization problem, introduced by Freedman and Headrick. According to it, the holographic entanglement entropy…

High Energy Physics - Theory · Physics 2019-05-16 Cesar A. Agón , Jan de Boer , Juan F. Pedraza

We present a general framework to generate trees every vertex of which has a non-negative weight and a color. The colors are used to impose certain restrictions on the weight and colors of other vertices. We first extend the enumeration…

Discrete Mathematics · Computer Science 2024-01-19 Tınaz Ekim , Mordechai Shalom , Mehmet Aziz Yirik

In this work, we discover that causal inference provides a promising approach to capture heterophilic message-passing in Graph Neural Network (GNN). By leveraging cause-effect analysis, we can discern heterophilic edges based on asymmetric…

Machine Learning · Computer Science 2024-11-28 Botao Wang , Jia Li , Heng Chang , Keli Zhang , Fugee Tsung

Most causal discovery procedures assume that there are no latent confounders in the system, which is often violated in real-world problems. In this paper, we consider a challenging scenario for causal structure identification, where some…

Machine Learning · Computer Science 2022-10-06 Biwei Huang , Charles Jia Han Low , Feng Xie , Clark Glymour , Kun Zhang

The logarithm of the number of Eulerian orientations, normalised by the number of vertices, is known as the residual entropy in studies of ice-type models on graphs. The spanning tree entropy depends similarly on the number of spanning…

Combinatorics · Mathematics 2025-03-07 Mikhail Isaev , Brendan D. McKay , Rui-Ray Zhang

We propose a tensor product structure that is compatible with the hypergraph structure. We define the algebraic connectivity of the $(m+1)$-uniform hypergraph in this product, and prove the relationship with the vertex connectivity. We…

Numerical Analysis · Mathematics 2023-10-10 Jiaqi Gu , Shenghao Feng , Yimin Wei

We study online robust matrix completion on graphs. At each iteration a vector with some entries missing is revealed and our goal is to reconstruct it by identifying the underlying low-dimensional subspace from which the vectors are drawn.…

Information Theory · Computer Science 2016-05-16 Symeon Chouvardas , Mohammed Amin Abdullah , Lucas Claude , Moez Draief

Generating novel molecules with optimal properties is a crucial step in many industries such as drug discovery. Recently, deep generative models have shown a promising way of performing de-novo molecular design. Although graph generative…

Machine Learning · Computer Science 2018-11-27 Rim Assouel , Mohamed Ahmed , Marwin H Segler , Amir Saffari , Yoshua Bengio

Hierarchical clustering is a fundamental machine-learning technique for grouping data points into dendrograms. However, existing hierarchical clustering methods encounter two primary challenges: 1) Most methods specify dendrograms without a…

Machine Learning · Computer Science 2025-12-02 Guangjie Zeng , Hao Peng , Angsheng Li , Li Sun , Chunyang Liu , Shengze Li , Yicheng Pan , Philip S. Yu

In this paper we explore the concept of hierarchy as a quantifiable descriptor of ordered structures, departing from the definition of three conditions to be satisfied for a hierarchical structure: {\em order}, {\em predictability} and {\em…

Data Analysis, Statistics and Probability · Physics 2011-03-24 Bernat Corominas-Murtra , Joaquín Goñi , Carlos Rodríguez-Caso , Ricard Solé

We describe a new method for the random sampling of connected networks with a specified degree sequence. We consider both the case of simple graphs and that of loopless multigraphs. The constraints of fixed degrees and of connectedness are…

Physics and Society · Physics 2020-12-03 Szabolcs Horvát , Carl D. Modes

We propose new methods for Support Vector Machines (SVMs) using tree architecture for multi-class classi- fication. In each node of the tree, we select an appropriate binary classifier using entropy and generalization error estimation, then…

Machine Learning · Computer Science 2017-08-29 Pittipol Kantavat , Boonserm Kijsirikul , Patoomsiri Songsiri , Ken-ichi Fukui , Masayuki Numao

We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…

Discrete Mathematics · Computer Science 2021-03-22 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

Breaking of equivalence between the microcanonical ensemble and the canonical ensemble, describing a large system subject to hard and soft constraints, respectively, was recently shown to occur in large random graphs. Hard constraints must…

Probability · Mathematics 2017-06-06 Diego Garlaschelli , Frank den Hollander , Andrea Roccaverde

Link prediction is a key problem for network-structured data, attracting considerable research efforts owing to its diverse applications. The current link prediction methods focus on general networks and are overly dependent on either the…

Social and Information Networks · Computer Science 2024-01-17 Min Zhou , Bisheng Li , Menglin Yang , Lujia Pan

There are hierarchical characteristics in the network and how to effectively reveal the hierarchical characteristics in the network is a problem in the research of network structure. If a node is assigned to the community to which it…

Social and Information Networks · Computer Science 2020-03-06 Shun Fu , Ji Xu

This work studies fundamental limits for recovering the underlying correspondence among multiple correlated graphs. In the setting of inhomogeneous random graphs, we present and analyze a matching algorithm: first partially match the graphs…

Data Structures and Algorithms · Computer Science 2025-07-01 Taha Ameen , Bruce Hajek