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Motivated by applications in social and biological network analysis, we introduce a new form of agnostic clustering termed~\emph{motif correlation clustering}, which aims to minimize the cost of clustering errors associated with both edges…

Data Structures and Algorithms · Computer Science 2018-11-07 Pan Li , Gregory J. Puleo , Olgica Milenkovic

Graph classes of bounded tree rank were introduced recently in the context of the model checking problem for first-order logic of graphs. These graph classes are a common generalization of graph classes of bounded degree and bounded…

Discrete Mathematics · Computer Science 2025-10-08 Jakub Gajarský , Rose McCarty

This paper is concerned with the approximation of tensors using tree-based tensor formats, which are tensor networks whose graphs are dimension partition trees. We consider Hilbert tensor spaces of multivariate functions defined on a…

Numerical Analysis · Mathematics 2019-09-11 Anthony Nouy

We generalize the structure theorem of Robertson and Seymour for graphs excluding a fixed graph $H$ as a minor to graphs excluding $H$ as a topological subgraph. We prove that for a fixed $H$, every graph excluding $H$ as a topological…

Data Structures and Algorithms · Computer Science 2015-03-19 Martin Grohe , Dániel Marx

In this paper, we introduce a new problem called Tree-Residue Vertex-Breaking (TRVB): given a multigraph $G$ some of whose vertices are marked "breakable," is it possible to convert $G$ into a tree via a sequence of "vertex-breaking"…

Computational Complexity · Computer Science 2018-05-04 Erik D. Demaine , Mikhail Rudoy

We propose a novel algorithm for unsupervised graph representation learning with attributed graphs. It combines three advantages addressing some current limitations of the literature: i) The model is inductive: it can embed new graphs…

Machine Learning · Computer Science 2020-08-18 Louis Béthune , Yacouba Kaloga , Pierre Borgnat , Aurélien Garivier , Amaury Habrard

We introduce the (private) entropy of a directed graph (in a new network coding sense) as well as a number of related concepts. We show that the entropy of a directed graph is identical to its guessing number and can be bounded from below…

Combinatorics · Mathematics 2007-11-28 Soren Riis

Learning the structure of a causal graphical model using both observational and interventional data is a fundamental problem in many scientific fields. A promising direction is continuous optimization for score-based methods, which,…

Machine Learning · Computer Science 2022-02-28 Phillip Lippe , Taco Cohen , Efstratios Gavves

Bell's theorem shows that our intuitive understanding of causation must be overturned in light of quantum correlations. Nevertheless, quantum mechanics does not permit signalling and hence a notion of cause remains. Understanding this…

Quantum Physics · Physics 2016-10-19 Mirjam Weilenmann , Roger Colbeck

Despite being very successful within the pattern recognition and machine learning community, graph-based methods are often unusable because of the lack of mathematical operations defined in graph domain. Graph embedding, which maps graphs…

Computer Vision and Pattern Recognition · Computer Science 2020-01-07 Anjan Dutta , Pau Riba , Josep Lladós , Alicia Fornés

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

We seek to automate the design of molecules based on specific chemical properties. In computational terms, this task involves continuous embedding and generation of molecular graphs. Our primary contribution is the direct realization of…

Machine Learning · Computer Science 2019-04-01 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Hierarchical graph clustering is a common technique to reveal the multi-scale structure of complex networks. We propose a novel metric for assessing the quality of a hierarchical clustering. This metric reflects the ability to reconstruct…

Social and Information Networks · Computer Science 2018-07-16 Thomas Bonald , Bertrand Charpentier

A graph theoretic approach is proposed for object shape representation in a hierarchical compositional architecture called Compositional Hierarchy of Parts (CHOP). In the proposed approach, vocabulary learning is performed using a hybrid…

Computer Vision and Pattern Recognition · Computer Science 2015-01-26 Umit Rusen Aktas , Mete Ozay , Ales Leonardis , Jeremy L. Wyatt

The Subgraph Isomorphism problem is of considerable importance in computer science. We examine the problem when the pattern graph H is of bounded treewidth, as occurs in a variety of applications. This problem has a well-known algorithm via…

Data Structures and Algorithms · Computer Science 2021-05-12 Karl Bringmann , Jasper Slusallek

We develop a new framework for generalizing approximation algorithms from the structural graph algorithm literature so that they apply to graphs somewhat close to that class (a scenario we expect is common when working with real-world…

Graph clustering is a fundamental problem in unsupervised learning, with numerous applications in computer science and in analysing real-world data. In many real-world applications, we find that the clusters have a significant high-level…

Data Structures and Algorithms · Computer Science 2023-01-02 Peter Macgregor

We study the tailoring of structured random graph ensembles to real networks, with the objective of generating precise and practical mathematical tools for quantifying and comparing network topologies macroscopically, beyond the level of…

Disordered Systems and Neural Networks · Physics 2015-05-13 A. Annibale , A. C. C. Coolen , L. P. Fernandes , F. Fraternali , J. Kleinjung

In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…

Discrete Mathematics · Computer Science 2011-04-19 Emeric Gioan , Christophe Paul

In a finite undirected simple graph, a {\it chordless cycle} is an induced subgraph which is a cycle. We propose two algorithms to enumerate all chordless cycles of such a graph. Compared to other similar algorithms, the proposed algorithms…

Data Structures and Algorithms · Computer Science 2014-12-01 Elisângela Silva Dias , Diane Castonguay , Humberto Longo , Walid Abdala Rfaei Jradi
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