Related papers: Cyclic sieving phenomena for trees and tree-rooted…
We develop a notion of groups that act acylindrically and non-elementarily on simplicial trees, which we call acylindrically arboreal groups. We then prove a complete classification of when graph products of groups and the fundamental…
This paper uses combinatorics and group theory to answer questions about the assembly of icosahedral viral shells. Although the geometric structure of the capsid (shell) is fairly well understood in terms of its constituent subunits, the…
Combinatorial classes T that are recursively defined using combinations of the standard multiset, sequence, directed cycle and cycle constructions, and their restrictions, have generating series T(z) with a positive radius of convergence;…
In classification and forecasting with tabular data, one often utilizes tree-based models. Those can be competitive with deep neural networks on tabular data and, under some conditions, explainable. The explainability depends on the depth…
Let $P$ be a set of $n$ points in the plane in general position. We show that at least $\lfloor n/3\rfloor$ plane spanning trees can be packed into the complete geometric graph on $P$. This improves the previous best known lower bound…
A fringe subtree of a rooted tree is a subtree induced by one of the vertices and all its descendants. We consider the problem of estimating the number of distinct fringe subtrees in two types of random trees: simply generated trees and…
We study the simple random walk on trees and give estimates on the mixing and relaxation time. Relying on a recent characterization by Basu, Hermon and Peres, we give geometric criteria, which are easy to verify and allow to determine…
Phylogenetic networks are a generalization of phylogenetic trees that are used to represent reticulate evolution. Unrooted phylogenetic networks form a special class of such networks, which naturally generalize unrooted phylogenetic trees.…
We give closed form expressions for the numbers of multi-rooted plane trees with specified degrees of root vertices. This results in an infinite number of integer sequences some of which are known to have an alternative interpretation. We…
A rooted tree T is a poset whose Hasse diagram is a graph-theoretic tree having a unique minimal element. We study rowmotion on antichains and lower order ideals of T. Recently Elizalde, Roby, Plante and Sagan considered rowmotion on fences…
Let T be a tree with an action of a finitely generated group G. Given a suitable equivalence relation on the set of edge stabilizers of T (such as commensurability, co-elementarity in a relatively hyperbolic group, or commutation in a…
We study the propagation of outliers in cyclic causal graphs with linear structural equations, tracing them back to one or several "root cause" nodes. We show that it is possible to identify a short list of potential root causes provided…
In many domains, data measurements can naturally be associated with the leaves of a tree, expressing the relationships among these measurements. For example, companies belong to industries, which in turn belong to ever coarser divisions…
A cyclic random walk is a random walk whose transition probabilities/rates can be written as a superposition of the empirical measures of a family of finite cycles. This identifies a convex set of models. We discuss the problem of…
A cyclic base ordering of a connected graph $G$, is a cyclic ordering of $E(G)$ such that every cyclically consecutive $|V(G)|-1$ edges form a spanning tree. In this project, we study cyclic base ordering of various families of graphs,…
The degree distribution of an ordered tree $T$ with $n$ nodes is $\vec{n} = (n_0,\ldots,n_{n-1})$, where $n_i$ is the number of nodes in $T$ with $i$ children. Let $\mathcal{N}(\vec{n})$ be the number of trees with degree distribution…
We examine a discrete random recursive tree growth process that, at each time step, either adds or deletes a node from the tree with probability $p$ and $1-p$, respectively. Node addition follows the usual uniform attachment model. For node…
We study power-set operations on classes of trees and tree algebras. Our main result consists of a distributive law between the tree monad and the upwards-closed power-set monad, in the case where all trees are assumed to be linear. For…
For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…
Let $c_n$ denote the number of nodes at a distance $n$ from the root of a rooted tree. A criterion for proving the rationality and computing the rational generating function of the sequence $\{c_n\}$ is described. This criterion is applied…