Related papers: Growing Self-Similar Markov Trees
We consider a Brownian tree consisting of a collection of one-dimensional Brownian paths started from the origin, whose genealogical structure is given by the Continuum Random Tree (CRT). This Brownian tree may be generated from the…
Strong spatial mixing (SSM) is a form of correlation decay that has played an essential role in the design of approximate counting algorithms for spin systems. A notable example is the algorithm of Weitz (2006) for the hard-core model on…
We consider fragmentations of an R-tree $T$ driven by cuts arriving according to a Poisson process on $T \times [0, \infty)$, where the first co-ordinate specifies the location of the cut and the second the time at which it occurs. The…
We introduce a general recursive method to construct continuum random trees (CRTs) from independent copies of a random string of beads, that is, any random interval equipped with a random discrete probability measure, and from related…
This paper studies a Markov chain for phylogenetic reconstruction which uses a popular transition between tree topologies known as subtree pruning-and-regrafting (SPR). We analyze the Markov chain in the simpler setting that the generating…
We introduce a family of branch merging operations on continuum trees and show that Ford CRTs are distributionally invariant. This operation is new even in the special case of the Brownian CRT, which we explore in more detail. The…
A self-similar growth-fragmentation describes the evolution of particles that grow and split as time passes. Its genealogy yields a self-similar continuum tree endowed with an intrinsic measure. Extending results of Haas for pure…
The Mondrian process represents an elegant and powerful approach for space partition modelling. However, as it restricts the partitions to be axis-aligned, its modelling flexibility is limited. In this work, we propose a self-consistent…
We present a construction of a L\'evy continuum random tree (CRT) associated with a super-critical continuous state branching process using the so-called exploration process and a Girsanov's theorem. We also extend the pruning procedure to…
The Stochastic Context Tree (SCOT) is a useful tool for studying infinite random sequences generated by an m-Markov Chain (m-MC). It captures the phenomenon that the probability distribution of the next state sometimes depends on less than…
The real trees form a class of metric spaces that extends the class of trees with edge lengths by allowing behavior such as infinite total edge length and vertices with infinite branching degree. Aldous's Brownian continuum random tree, the…
The first part of this paper ( arXiv:1607.02114 ) introduced splitting trees, those chronological trees admitting the self-similarity property where individuals give birth, at constant rate, to iid copies of themselves. It also established…
Rooted, weighted continuum random trees are used to describe limits of sequences of random discrete trees. Formally, they are random quadruples $(\mathcal{T},d,r,p)$, where $(\mathcal{T},d)$ is a tree-like metric space, $r\in\mathcal{T}$ is…
In the critical beta-splitting model of a random $n$-leaf rooted tree, clades are recursively split into sub-clades, and a clade of $m$ leaves is split into sub-clades containing $i$ and $m-i$ leaves with probabilities $\propto 1/(i(m-i))$.…
Rooted bifurcating trees are mathematical objects used to model evolutionary relationships and arise naturally in both coalescent theory and phylogenetics. Recent numerical representations of tree topologies, known as F-matrices, allow for…
A Brownian motion tree (BMT) model is a Gaussian model whose associated set of covariance matrices is linearly constrained according to common ancestry in a phylogenetic tree. We study the complexity of inferring the maximum likelihood (ML)…
We introduce the continuum self-similar tree (CSST) and characterize it topologically. We apply this to answer a question of Curien about the topology of the continuum random tree (CRT). We also give a topological characterization of other…
Inspired by biological dynamics, we consider a growth Markov process taking values on the space of rooted binary trees, similar to the Aldous-Shields model. Fix $n\ge 1$ and $\beta>0$. We start at time 0 with the tree composed of a root…
We revisit the classical problem of approximating a stochastic differential equation by a discrete-time and discrete-space Markov chain. Our construction iterates Caratheodory's theorem over time to match the moments of the increments…
We consider maps which are constructed from plane trees by assigning marks to the corners of each vertex and then connecting each pair of consecutive marks on their contour by a single edge. A measure is defined on the set of such maps by…