Related papers: Ancestral diversity in fragmentation trees
In order to conduct a statistical analysis on a given set of phylogenetic gene trees, we often use a distance measure between two trees. In a statistical distance-based method to analyze discordance between gene trees, it is a key to decide…
The motivation for this paper is the study of the phase transition for recurrence/transience of a class of self-interacting random walks on trees, which includes the once-reinforced random walk. For this purpose, we define a quantity, that…
We establish limit theorems that describe the asymptotic local and global geometric behaviour of random enriched trees considered up to symmetry. We apply these general results to random unlabelled weighted rooted graphs and uniform random…
Phylogenetic Diversity (PD) is a prominent quantitative measure of the biodiversity of a collection of present-day species (taxa). This measure is based on the evolutionary distance among the species in the collection. Loosely speaking, if…
Given a general critical or sub-critical branching mechanism and its associated L\'evy continuum random tree, we consider a pruning procedure on this tree using a Poisson snake. It defines a fragmentation process on the tree. We compute the…
We consider uniform random permutations drawn from a family enumerated through generating trees. We develop a new general technique to establish a central limit theorem for the number of consecutive occurrences of a fixed pattern in such…
We consider Galton--Watson trees conditioned on both the total number of vertices $n$ and the number of leaves $k$. The focus is on the case in which both $k$ and $n$ grow to infinity and $k = \alpha n + O(1)$, with $\alpha \in (0, 1)$.…
We derive a message passing method for computing the spectra of locally tree-like networks and an approximation to it that allows us to compute closed-form expressions or fast numerical approximates for the spectral density of random graphs…
We study the asymptotic distribution of integers sharing the same rooted-tree structure that encodes their complete prime factorization tower. For each tree we derive an explicit density formula depending only on a pair $(m,k)$, the density…
We consider a random process on recursive trees, with three types of events. Vertices give birth at a constant rate (growth), each edge may be removed independently (fragmentation of the tree) and clusters (or trees) are frozen with a rate…
We show that the genealogy of any self-similar fragmentation process can be encoded in a compact measured real tree. Under some Malthusian hypotheses, we compute the fractal Hausdorff dimension of this tree through the use of a natural…
Reconstructing the ancestral state of a group of species helps answer many important questions in evolutionary biology. Therefore, it is crucial to understand when we can estimate the ancestral state accurately. Previous works provide a…
The Yule branching process is a classical model for the random generation of gene tree topologies in population genetics. It generates binary ranked trees -- also called "histories" -- with a finite number $n$ of leaves. We study the…
Ancestral inference for branching processes in random environments involves determining the ancestor distribution parameters using the population sizes of descendant generations. In this paper, we introduce a new methodology for ancestral…
We investigate analytically and numerically eigenfunction statistics in a disordered system on a finite Bethe lattice (Cayley tree). We show that the wave function amplitude at the root of a tree is distributed fractally in a large part of…
We provide information about the asymptotic regimes for a homogeneous fragmentation of a finite set. We establish a phase transition for the asymptotic behaviours of the shattering times, defined as the first instants when all the blocks of…
We prove that the uniform unlabelled unrooted tree with n vertices and vertex degrees in a fixed set converges in the Gromov-Hausdorff sense after a suitable rescaling to the Brownian continuum random tree. This proves a conjecture by…
Let $T\_n$ denote the set of unrooted labeled trees of size $n$ and let $T\_n$ be a particular (finite, unlabeled) tree. Assuming that every tree of $T\_n$ is equally likely, it is shown that the limiting distribution as $n$ goes to…
We study branching diffusions in a bounded domain $D$ of $\mathbb{R}^d$ in which particles are killed upon hitting the boundary $\partial D$. It is known that any such process undergoes a phase transition when the branching rate $\beta$…
Phylogenetic networks provide a general framework for modeling reticulate evolutionary processes such as hybridization, recombination, and horizontal gene transfer. In this paper, we study the asymptotic counting of binary phylogenetic…