Related papers: Hydrodynamic liquid crystal models for lipid bilay…
In this paper we propose several models that describe the dynamics of liquid films which are covered by a high concentration layer of insoluble surfactant. First, we briefly review the 'classical' hydrodynamic form of the coupled evolution…
In this paper we present the results of a large-scale numerical investigation of structural properties of a model of cell membrane, simulated as a bilayer of flexible molecules in vacuum. The study was performed by carrying out extensive…
We have constructed a model for the kinetics of rupture of membranes under tension, applying physical principles relevant to lipid bilayers held together by hydrophobic interactions. The membrane is characterized by the bulk compressibility…
We consider surface finite elements and a semi-implicit time stepping scheme to simulate fluid deformable surfaces. Such surfaces are modeled by incompressible surface Navier-Stokes equations with bending forces. Here, we consider closed…
Lipid membranes are abundant in living organisms, where they constitute a surrounding shell for cells and their organelles. There are many circumstances in which the deformations of lipid membranes are involved in living cells: fusion and…
In the study of oceanic flows at the geophysical scale, the phenomenon of density stratification plays a central role in the dynamics of the system. Two categories of mathematical models are commonly used to describe the role played by the…
We rigorously justify the bilayer shallow-water system as an approximation to the hydrostatic Euler equations in situations where the flow is density-stratified with close-to-piecewise constant density profiles, and close-to-columnar…
We study, using dissipative particle dynamics simulations, the effect of active lipid flip-flop on model fluid bilayer membranes. We consider both cases of symmetric as well as asymmetric flip-flops. Symmetric flip-flop leads to a steady…
We consider a computational model for complex-fluid-solid interaction based on a diffuse-interface model for the complex fluid and a hyperelastic-material model for the solid. The diffuse-interface complex-fluid model is described by the…
A new method is proposed for the analysis of specular and off-specular reflectivity from supported lipid bilayers. Both thermal fluctuations and the "static" roughness induced by the substrate are carefully taken into account. Examples from…
In this paper, we present energy-stable numerical schemes for a Smectic-A liquid crystal model. This model involve the hydrodynamic velocity-pressure macroscopic variables $({\bf u},p)$ and the microscopic order parameter of Smectic-A…
Many cellular organelles are membrane-bound structures with complex membrane composition and shape. Their shapes have been observed to depend on the metabolic state of the organelle, and the mechanisms that couple biochemical pathways and…
Modeling membrane interactions with arbitrarily shaped colloidal particles, such as environmental micro- and nanoplastics, at the cell scale remains particularly challenging, owing to the complexity of particle geometries and the need to…
We propose a kinetic framework for single-component non-ideal isothermal flows. Starting from a kinetic model for a non-ideal fluid, we show that under conventional scaling the Navier-Stokes equations with a non-ideal equation of state are…
We present a minimal model for simulating dynamics of assorted lipid assemblies in a computationally efficient manner. Our model is particle-based and consists of coarse-grained beads put together on a modular platform to give generic…
We derive a class of Navier--Stokes--Cahn--Hilliard systems that models two-phase flows with mass transfer coupled to the process of chemotaxis. These thermodynamically consistent models can be seen as the natural Navier--Stokes analogues…
We consider the viscous incompressible fluids in a three-dimensional horizontally periodic domain bounded below by a fixed smooth boundary and above by a free moving surface. The fluid dynamics are governed by the Navier-Stokes equations…
We introduce a new mesoscopic model for nematic liquid crystals (LCs). We extend the particle-based stochastic rotation dynamics method, which reproduces the Navier-Stokes equation, to anisotropic fluids by including a simplified…
Cells offer numerous inspiring examples where proteins and membranes combine to form complex structures that are key to intracellular compartmentalization, cargo transport, and specialization of cell morphology. Despite this wealth of…
In this paper, we study a hydrodynamic system modeling the deformation of vesicle membranes in incompressible viscous fluids. The system consists of the Navier-Stokes equations coupled with a fourth order phase-field equation. In the three…