English
Related papers

Related papers: Supporting Medicinal Chemists in Iterative Hypothe…

200 papers

The rapid growth of biomedical literature and curated databases has made it increasingly difficult for researchers to systematically connect biomarker mechanisms to actionable drug combination hypotheses. We present AI Co-Scientist (CoDHy),…

Computation and Language · Computer Science 2026-03-03 Raneen Younis , Suvinava Basak , Lukas Chavez , Zahra Ahmadi

Retrosynthesis analysis is pivotal yet challenging in drug discovery and organic chemistry. Despite the proliferation of computational tools over the past decade, AI-based systems often fall short in generalizing across diverse reaction…

Machine Learning · Computer Science 2024-08-21 Yifei Yang , Runhan Shi , Zuchao Li , Shu Jiang , Bao-Liang Lu , Yang Yang , Hai Zhao

Assessing whether a molecule can be synthesised is a primary task in drug discovery. It enables computational chemists to filter for viable compounds or bias molecular generative models. The notion of synthesisability is dynamic as it…

Biomolecules · Quantitative Biology 2024-04-15 Antonia Calvi , Théophile Gaudin , Dominik Miketa , Dominique Sydow , Liam Wilbraham

Background: Recruitment for cohorts involving complex liver diseases, such as hepatocellular carcinoma and liver cirrhosis, often requires interpreting semantically complex criteria. Traditional manual screening methods are time-consuming…

Artificial Intelligence · Computer Science 2025-02-27 Xiongbin Gui , Hanlin Lv , Xiao Wang , Longting Lv , Yi Xiao , Lei Wang

Polymers play a crucial role in the development of engineering materials, with applications ranging from mechanical to biomedical fields. However, the limited polymerization processes constrain the variety of organic building blocks that…

Soft Condensed Matter · Physics 2024-12-13 Debasish Mohanty , V Shreyas , Akshaya Palai , Bharath Ramsundar

We partner with a leading European healthcare provider and design a mechanism to match patients with family doctors in primary care. We define the matchmaking process for several distinct use cases given different levels of available…

Information Retrieval · Computer Science 2019-03-20 Qiwei Han , Mengxin Ji , Inigo Martinez de Rituerto de Troya , Manas Gaur , Leid Zejnilovic

A comprehensive pharmaceutical recommendation system was designed based on the patients and drugs features extracted from Drugs.com and Druglib.com. First, data from these databases were combined, and a dataset of patients and drug…

What-if (provisioning for an update to a database) and how-to (how to modify the database to achieve a goal) analyses provide insights to users who wish to examine hypothetical scenarios without making actual changes to a database and…

Databases · Computer Science 2022-03-29 Sainyam Galhotra , Amir Gilad , Sudeepa Roy , Babak Salimi

Medication recommender is to suggest appropriate medication combinations based on a patient's health history, e.g., diagnoses and procedures. Existing works represent different diagnoses/procedures well separated by one-hot encodings.…

Information Retrieval · Computer Science 2024-11-06 Yuliang Liang , Yuting Liu , Yizhou Dang , Enneng Yang , Guibing Guo , Wei Cai , Jianzhe Zhao , Xingwei Wang

The pharmaceutical industry faces unprecedented challenges in drug discovery, with traditional approaches struggling to meet modern therapeutic development demands. This paper introduces a novel AI framework, Tippy, that transforms…

AI is transforming pharmaceutical search, where traditional systems struggle with multimodal content and manual curation. Finder is a scalable AI-powered framework that unifies retrieval across text, images, audio, and video using hybrid…

Information Retrieval · Computer Science 2026-03-18 Suyash Mishra , Srikanth Patil , Satyanarayan Pati , Sagar Sahu , Baddu Narendra

As AI-generated text enters the real-world at scale, institutions increasingly use commercial AI-text detectors, especially in education and academic-integrity workflows. We report a surprising empirical finding about such systems: when…

Computation and Language · Computer Science 2026-05-20 Yixuan Even Xu , Ziqian Zhong , Aditi Raghunathan , Fei Fang , J. Zico Kolter

Traditional drug design faces significant challenges due to inherent chemical and biological complexities, often resulting in high failure rates in clinical trials. Deep learning advancements, particularly generative models, offer potential…

Quantitative Methods · Quantitative Biology 2025-08-27 Mahsa Sheikholeslami , Navid Mazrouei , Yousof Gheisari , Afshin Fasihi , Matin Irajpour , Ali Motahharynia

There is an increasing need in our society to achieve faster advances in Science to tackle urgent problems, such as climate changes, environmental hazards, sustainable energy systems, pandemics, among others. In certain domains like…

The rapid advance of generative AI is reshaping the strategic vision for R&D across industries. The unique challenges of pharmaceutical R&D will see applications of generative AI deliver value along the entire value chain from early…

Quantitative Methods · Quantitative Biology 2023-12-21 Guy Doron , Sam Genway , Mark Roberts , Sai Jasti

Artificial intelligence (AI) has the potential to revolutionize the drug discovery process, offering improved efficiency, accuracy, and speed. However, the successful application of AI is dependent on the availability of high-quality data,…

Large Language Models exhibit strong reasoning and semantic understanding capabilities but often hallucinate in domains that require expert knowledge, among which fabrications, the generation of factually incorrect yet fluent statements,…

The development of AI-assisted chemical synthesis tools requires comprehensive datasets covering diverse reaction types, yet current high-throughput experimental (HTE) approaches are expensive and limited in scope. Chemical literature…

Information Retrieval · Computer Science 2025-07-01 Kexin Chen , Yuyang Du , Junyou Li , Hanqun Cao , Menghao Guo , Xilin Dang , Lanqing Li , Jiezhong Qiu , Pheng Ann Heng , Guangyong Chen

Background Medical and life science research generates millions of publications, and it is a great challenge for researchers to utilize this information in full since its scale and complexity greatly surpasses human reading capabilities.…

Finding interesting phenomena is the core of scientific discovery, but it is a manual, ill-defined concept. We present an integrative pipeline for automating the discovery of interesting simple hypotheses (feature-target relations with…

Quantitative Methods · Quantitative Biology 2025-09-09 Dan Ofer , Michal Linial , Dafna Shahaf