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What can representational similarity matrices (RSMs) tell us about a neural code? As the popularity of these summary statistics grows, so too does the need for a more complete characterization of their properties. Here, we show that…

Neurons and Cognition · Quantitative Biology 2026-05-21 Farhad Pashakhanloo , Jacob A. Zavatone-Veth

Neural Networks (NNs) have been successfully employed to represent the state evolution of complex dynamical systems. Such models, referred to as NN dynamic models (NNDMs), use iterative noisy predictions of NN to estimate a distribution of…

Systems and Control · Electrical Eng. & Systems 2025-05-27 Rayan Mazouz , Karan Muvvala , Akash Ratheesh , Luca Laurenti , Morteza Lahijanian

At the macroscale, the brain operates as a network of interconnected neuronal populations, which display rhythmic dynamics that support interareal communication. Understanding how stimulation of a particular brain area impacts such…

Neurons and Cognition · Quantitative Biology 2020-11-12 Lia Papadopoulos , Christopher W. Lynn , Demian Battaglia , Danielle S. Bassett

Reverse engineering the brain is proving difficult, perhaps impossible. While many believe that this is just a matter of time and effort, a different approach might help. Here, we describe a very simple idea which explains the power of the…

Neural and Evolutionary Computing · Computer Science 2015-12-17 Fergal Byrne

Oscillations of free intracellular calcium concentration are thought to be important in the control of a wide variety of physiological phenomena, and there is long-standing interest in understanding these oscillations via the investigation…

Dynamical Systems · Mathematics 2024-01-31 Behnaz Rahmani , Samuel Jelbart , Vivien Kirk , James Sneyd

Mental and cognitive representations are believed to reside on low-dimensional, non-linear manifolds embedded within high-dimensional brain activity. Uncovering these manifolds is key to understanding individual differences in brain…

Machine Learning · Computer Science 2025-05-02 Eloy Geenjaar , Vince Calhoun

Cascading large-amplitude bursts in neural activity, termed avalanches, are thought to provide insight into the complex spatially distributed interactions in neural systems. In human neuroimaging, for example, avalanches occurring during…

Neurons and Cognition · Quantitative Biology 2021-07-28 Kanika Bansal , Javier O. Garcia , Nina Lauharatanahirun , Sarah F. Muldoon , Paul Sajda , Jean M. Vettel

Dynamics of a chaotic spiking neuron model are being studied mathematically and experimentally. The Nonlinear Dynamic State neuron (NDS) is analysed to further understand the model and improve it. Chaos has many interesting properties such…

Artificial Intelligence · Computer Science 2013-10-29 Mohammad Alhawarat , Waleed Nazih , Mohammad Eldesouki

Human learning is a complex phenomenon that requires adaptive processes across a range of temporal and spacial scales. While our understanding of those processes at single scales has increased exponentially over the last few years, a…

Neurons and Cognition · Quantitative Biology 2016-09-08 Marcelo G. Mattar , Danielle S. Bassett

Neural population equations such as neural mass or field models are widely used to study brain activity on a large scale. However, the relation of these models to the properties of single neurons is unclear. Here we derive an equation for…

Neurons and Cognition · Quantitative Biology 2017-04-24 Tilo Schwalger , Moritz Deger , Wulfram Gerstner

In this chapter, we utilize dynamical systems to analyze several aspects of machine learning algorithms. As an expository contribution we demonstrate how to re-formulate a wide variety of challenges from deep neural networks, (stochastic)…

Dynamical Systems · Mathematics 2025-07-08 Dennis Chemnitz , Maximilian Engel , Christian Kuehn , Sara-Viola Kuntz

We extend our study of Motion Planning via Manifold Samples (MMS), a general algorithmic framework that combines geometric methods for the exact and complete analysis of low-dimensional configuration spaces with sampling-based approaches…

Robotics · Computer Science 2015-09-17 Oren Salzman , Michael Hemmer , Dan Halperin

We deal with the problem of bridging the gap between two scales in neuronal modeling. At the first (microscopic) scale, neurons are considered individually and their behavior described by stochastic differential equations that govern the…

Biological Physics · Physics 2010-11-09 Olivier Faugeras , Jonathan Touboul , Bruno Cessac

Recent advances in neuroscience and in the technology of functional magnetic resonance imaging (fMRI) and electro-encephalography (EEG) have propelled a growing interest in brain-network clustering via time-series analysis. Notwithstanding,…

Machine Learning · Computer Science 2019-06-07 Cong Ye , Konstantinos Slavakis , Pratik V. Patil , Sarah F. Muldoon , John Medaglia

The restricted Boltzmann machine (RBM) is one of the fundamental building blocks of deep learning. RBM finds wide applications in dimensional reduction, feature extraction, and recommender systems via modeling the probability distributions…

Strongly Correlated Electrons · Physics 2018-02-07 Jing Chen , Song Cheng , Haidong Xie , Lei Wang , Tao Xiang

$\textbf{Formal version available at}$ https://cell.com/patterns/fulltext/S2666-3899(23)00200-3 Networks of spiking neurons underpin the extraordinary information-processing capabilities of the brain and have become pillar models in…

Neural and Evolutionary Computing · Computer Science 2023-09-18 Gehua Ma , Rui Yan , Huajin Tang

Reasoning, the process of devising and executing complex goal-oriented action sequences, remains a critical challenge in AI. Current large language models (LLMs) primarily employ Chain-of-Thought (CoT) techniques, which suffer from brittle…

Artificial Intelligence · Computer Science 2025-08-05 Guan Wang , Jin Li , Yuhao Sun , Xing Chen , Changling Liu , Yue Wu , Meng Lu , Sen Song , Yasin Abbasi Yadkori

Designing deep neural networks is an art that often involves an expensive search over candidate architectures. To overcome this for recurrent neural nets (RNNs), we establish a connection between the hidden state dynamics in an RNN and…

Machine Learning · Computer Science 2021-12-14 Tan M. Nguyen , Richard G. Baraniuk , Andrea L. Bertozzi , Stanley J. Osher , Bao Wang

Statistical mechanics determines the abundance of different arrangements of matter depending on cost-benefit balances. Its formalism and phenomenology percolate throughout biological processes and set limits to effective computation. Under…

Neurons and Cognition · Quantitative Biology 2021-02-03 Luís F Seoane

Dynamical effects on healthy brains and brains affected by tumor are investigated via numerical simulations. The brains are modeled as multilayer networks consisting of neuronal oscillators, whose connectivities are extracted from Magnetic…

Adaptation and Self-Organizing Systems · Physics 2021-02-03 I. Koulierakis , D. A. Verganelakis , I. Omelchenko , A. Zakharova , E. Schoell , A. Provata