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Living neural networks emerge through a process of growth and self-organization that begins with a single cell and results in a brain, an organized and functional computational device. Artificial neural networks, however, rely on…

Neural and Evolutionary Computing · Computer Science 2019-06-05 Guruprasad Raghavan , Matt Thomson

The design of fluid channel structures of reactors or separators of chemical processes is key to enhancing the mass transfer processes inside the devices. However, the systematic design of channel topological structures is difficult for…

Fluid Dynamics · Physics 2025-03-07 Chenhui Kou , Yuhui Yin , Min Zhu , Shengkun Jia , Yiqing Luo , Xigang Yuana , Lu Lu

This thesis is a compendium of research which brings together ideas from the fields of Complex Networks and Computational Neuroscience to address two questions regarding neural systems: 1) How the activity of neurons, via synaptic changes,…

Neurons and Cognition · Quantitative Biology 2013-02-19 Samuel Johnson

Vesicle-mediated secretion of ions or molecules is a central mechanism of cellular communication, for example in processes such as neurotransmission or hormone release. These events are inherently stochastic: vesicle fusions lead to bursts…

Statistical Mechanics · Physics 2026-05-08 Jan Hauke , Julian B. Voits , Ulrich S. Schwarz

We present a data-driven pipeline for model building that combines interpretable machine learning, hydrodynamic theories, and microscopic models. The goal is to uncover the underlying processes governing nonlinear dynamics experiments. We…

Soft Condensed Matter · Physics 2024-04-22 Jonathan Colen , Alexis Poncet , Denis Bartolo , Vincenzo Vitelli

The mammalian brain could contain dense and sparse network connectivity structures, including both excitatory and inhibitory neurons, but is without any clearly defined output layer. The neurons have time constants, which mean that the…

Neurons and Cognition · Quantitative Biology 2021-06-04 Udaya B. Rongala , Henrik Jörntell

Although individual neurons and neural populations exhibit the phenomenon of representational drift, perceptual and behavioral outputs of many neural circuits can remain stable across time scales over which representational drift is…

How spiking neuronal networks encode memories in their different time and spatial scales constitute a fundamental topic in neuroscience and neuro-inspired engineering. Much attention has been paid to large networks and long-term memory, for…

Neurons and Cognition · Quantitative Biology 2023-03-23 Fabio Schittler Neves , Marc Timme

Traveling waves of neural activity emerge in cortical networks both spontaneously and in response to stimuli. The spatiotemporal structure of waves can indicate the information they encode and the physiological processes that sustain them.…

Neurons and Cognition · Quantitative Biology 2023-12-12 Sage Shaw , Zachary P Kilpatrick

In the brain, learning signals change over time and synaptic location, and are applied based on the learning history at the synapse, in the complex process of neuromodulation. Learning in artificial neural networks, on the other hand, is…

Neural and Evolutionary Computing · Computer Science 2018-12-11 Dennis G Wilson , Sylvain Cussat-Blanc , Hervé Luga , Kyle Harrington

The human brain is a dynamical system whose extremely complex sensor-driven neural processes give rise to conceptual, logical cognition. Understanding the interplay between nonlinear neural dynamics and concept-level cognition remains a…

Neural and Evolutionary Computing · Computer Science 2024-11-19 Herbert Jaeger

While the last five years have seen considerable progress in understanding the internal representations of deep learning models, many questions remain. This is especially true when trying to understand the impact of model design choices,…

Machine Learning · Computer Science 2023-12-08 Henry Kvinge , Grayson Jorgenson , Davis Brown , Charles Godfrey , Tegan Emerson

I put forward a continuum theory for active nematic gels, defined as fluids or suspensions of orientable rodlike objects endowed with active dynamics, that is based on symmetry arguments and compatibility with thermodynamics. The starting…

Soft Condensed Matter · Physics 2017-11-15 Stefano S Turzi

A key question in neuroscience is at which level functional meaning emerges from biophysical phenomena. In most vertebrate systems, precise functions are assigned at the level of neural populations, while single-neurons are deemed…

Neurons and Cognition · Quantitative Biology 2017-03-17 Wieland Brendel , Ralph Bourdoukan , Pietro Vertechi , Christian K. Machens , Sophie Denéve

We investigate recurrent neural networks with asymmetric interactions and demonstrate that the inclusion of self-couplings or sparse excitatory inter-module connections leads to the emergence of a densely connected manifold of dynamically…

Disordered Systems and Neural Networks · Physics 2026-01-01 Davide Badalotti , Carlo Baldassi , Marc Mézard , Mattia Scardecchia , Riccardo Zecchina

We propose a dynamical neural network model with a hierarchical and modular structure. The network architecture can be derived by minimizing an energy function that is originally designed based on two kinds of neurons with quite different…

Neurons and Cognition · Quantitative Biology 2026-04-14 Kazuyoshi Tsutsumi , Ernst Niebur

The quintessential property of neuronal systems is their intensive patterns of selective synaptic connections. The current work describes a physics-based approach to neuronal shape modeling and synthesis and its consideration for the…

Neurons and Cognition · Quantitative Biology 2009-11-10 Luciano da Fontoura Costa , Regina Celia Coelho

Deciphering the underpinnings of the dynamical processes leading to information transmission, processing, and storing in the brain is a crucial challenge in neuroscience. An inspiring but speculative theoretical idea is that such dynamics…

Statistical Mechanics · Physics 2023-07-21 Guillermo B. Morales , Serena Di Santo , Miguel A. Muñoz

What visual information is encoded in individual brain regions, and how do distributed patterns combine to create their neural representations? Prior work has used generative models to replicate known category selectivity in isolated…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Haomiao Chen , Keith W Jamison , Mert R. Sabuncu , Amy Kuceyeski

One frequently wishes to learn a range of similar tasks as efficiently as possible, re-using knowledge across tasks. In artificial neural networks, this is typically accomplished by conditioning a network upon task context by injecting…

Machine Learning · Computer Science 2025-11-26 Ari S. Benjamin , Kyle Daruwalla , Christian Pehle , Abdul-Malik Zekri , Anthony M. Zador