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Existing audio analysis methods generally first transform the audio stream to spectrogram, and then feed it into CNN for further analysis. A standard CNN recognizes specific visual patterns over feature map, then pools for high-level…

Sound · Computer Science 2023-03-16 Yulin Pan , Xiangteng He , Biao Gong , Yuxin Peng , Yiliang Lv

Due to the expensive and time-consuming annotations (e.g., segmentation) for real-world images, recent works in computer vision resort to synthetic data. However, the performance on the real image often drops significantly because of the…

Computer Vision and Pattern Recognition · Computer Science 2019-04-03 Xinge Zhu , Hui Zhou , Ceyuan Yang , Jianping Shi , Dahua Lin

We present an approach to denoising spatial transcriptomics images that is particularly effective for uncovering cell identities in the regime of ultra-low sequencing depths, and also allows for interpolation of gene expression. The method…

Generative Adversarial Networks (GANs) have gained a lot of attention from machine learning community due to their ability to learn and mimic an input data distribution. GANs consist of a discriminator and a generator working in tandem…

Computation and Language · Computer Science 2018-06-19 Saurabh Sahu , Rahul Gupta , Carol Espy-Wilson

Recent improvements in Generative Adversarial Neural Networks (GANs) have shown their ability to generate higher quality samples as well as to learn good representations for transfer learning. Most of the representation learning methods…

Audio and Speech Processing · Electrical Eng. & Systems 2020-06-02 Kazi Nazmul Haque , Rajib Rana , John H. L. Hansen , Björn Schuller

With an aim to increase the capture range and accelerate the performance of state-of-the-art inter-subject and subject-to-template 3D registration, we propose deep learning-based methods that are trained to find the 3D position of…

Computer Vision and Pattern Recognition · Computer Science 2018-08-21 Seyed Sadegh Mohseni Salehi , Shadab Khan , Deniz Erdogmus , Ali Gholipour

Background: Spatial transcriptomics have emerged as a powerful tool in biomedical research because of its ability to capture both the spatial contexts and abundance of the complete RNA transcript profile in organs of interest. However,…

Genomics · Quantitative Biology 2025-04-18 Shuo Shuo Liu , Shikun Wang , Yuxuan Chen , Anil K. Rustgi , Ming Yuan , Jianhua Hu

Spatial Transcriptomics (ST) reveals the spatial distribution of gene expression in tissues, offering critical insights into biological processes and disease mechanisms. However, the high cost, limited coverage, and technical complexity of…

Computer Vision and Pattern Recognition · Computer Science 2025-04-22 Yi Niu , Jiashuai Liu , Yingkang Zhan , Jiangbo Shi , Di Zhang , Marika Reinius , Ines Machado , Mireia Crispin-Ortuzar , Jialun Wu , Chen Li , Zeyu Gao

Due to the memorization effect in Deep Neural Networks (DNNs), training with noisy labels usually results in inferior model performance. Existing state-of-the-art methods primarily adopt a sample selection strategy, which selects small-loss…

Computer Vision and Pattern Recognition · Computer Science 2021-03-25 Yazhou Yao , Zeren Sun , Chuanyi Zhang , Fumin Shen , Qi Wu , Jian Zhang , Zhenmin Tang

The ability to generate and recognize sequential data is fundamental for autonomous systems operating in dynamic environments. Inspired by the key principles of the brain-predictive coding and the Bayesian brain-we propose a novel…

Machine Learning · Computer Science 2025-01-03 Jungsik Hwang , Ahmadreza Ahmadi

The spatial location of cells within tissues and organs is crucial for the manifestation of their specific functions.Spatial transcriptomics technology enables comprehensive measurement of the gene expression patterns in tissues while…

Quantitative Methods · Quantitative Biology 2024-07-12 Shuailin Xue , Fangfang Zhu , Changmiao Wang , Wenwen Min

Learning unnormalized statistical models (e.g., energy-based models) is computationally challenging due to the complexity of handling the partition function. To eschew this complexity, noise-contrastive estimation~(NCE) has been proposed by…

Machine Learning · Computer Science 2023-06-14 Wei Jiang , Jiayu Qin , Lingyu Wu , Changyou Chen , Tianbao Yang , Lijun Zhang

We propose a novel method for solving regression tasks using few-shot or weak supervision. At the core of our method is the fundamental observation that GANs are incredibly successful at encoding semantic information within their latent…

Computer Vision and Pattern Recognition · Computer Science 2021-07-26 Yotam Nitzan , Rinon Gal , Ofir Brenner , Daniel Cohen-Or

Benefit from large-scale training datasets, deep Convolutional Neural Networks(CNNs) have achieved impressive results in face recognition(FR). However, tremendous scale of datasets inevitably lead to noisy data, which obviously reduce the…

Computer Vision and Pattern Recognition · Computer Science 2019-03-27 Wei Hu , Yangyu Huang , Fan Zhang , Ruirui Li

We propose a probabilistic model for interpreting gene expression levels that are observed through single-cell RNA sequencing. In the model, each cell has a low-dimensional latent representation. Additional latent variables account for…

Machine Learning · Computer Science 2017-10-18 Romain Lopez , Jeffrey Regier , Michael Cole , Michael Jordan , Nir Yosef

As the hunt for an Earth-like exoplanets has intensified in recent years, so has the effort to characterise and model the stellar signals that can hide or mimic small planetary signals. Stellar variability arises from a number of sources,…

Solar and Stellar Astrophysics · Physics 2024-04-19 Niamh K. O'Sullivan , Suzanne Aigrain

Recent works show that Generative Adversarial Networks (GANs) can be successfully applied to chest X-ray data augmentation for lung disease recognition. However, the implausible and distorted pathology features generated from the less than…

Image and Video Processing · Electrical Eng. & Systems 2020-01-23 Yunyan Xing , Zongyuan Ge , Rui Zeng , Dwarikanath Mahapatra , Jarrel Seah , Meng Law , Tom Drummond

Spatially resolved transcriptomics is a fast-developing set of technologies that enables the measurement of localized gene expression across spatial locations in a sample. Detecting spatially varying genes is critical for analyzing such…

Applications · Statistics 2026-04-22 Pritam Dey , Rajarshi Guhaniyogi , Yang Ni , Bani K. Mallick

Networks of genetic expression can be modelled by hypergraphs with the additional structure that real coefficients are given to each vertex-edge incidence. The spectra, i.e. the multiset of the eigenvalues, of such hypergraphs, are known to…

Molecular Networks · Quantitative Biology 2021-09-24 Raffaella Mulas , Michael J. Casey

Despite success on a wide range of problems related to vision, generative adversarial networks (GANs) often suffer from inferior performance due to unstable training, especially for text generation. To solve this issue, we propose a new…

Machine Learning · Computer Science 2020-11-02 Yue Wu , Pan Zhou , Andrew Gordon Wilson , Eric P. Xing , Zhiting Hu