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As the size of large language models continue to scale, so does the computational resources required to run it. Spiking Neural Networks (SNNs) have emerged as an energy-efficient approach to deep learning that leverage sparse and…

Computation and Language · Computer Science 2024-07-12 Rui-Jie Zhu , Qihang Zhao , Guoqi Li , Jason K. Eshraghian

In recent years, single cell RNA sequencing has become a widely used technique to study cellular diversity and function. However, accurately annotating cell types from single cell data has been a challenging task, as it requires extensive…

Genomics · Quantitative Biology 2023-04-07 Zehua Zeng , Hongwu Du

Spiking Transformers have recently emerged as promising architectures for combining the efficiency of spiking neural networks with the representational power of self-attention. However, the lack of standardized implementations, evaluation…

Neural and Evolutionary Computing · Computer Science 2025-12-24 Sicheng Shen , Dongcheng Zhao , Linghao Feng , Zeyang Yue , Jindong Li , Tenglong Li , Guobin Shen , Yi Zeng

By integrating the self-attention capability and the biological properties of Spiking Neural Networks (SNNs), Spikformer applies the flourishing Transformer architecture to SNNs design. It introduces a Spiking Self-Attention (SSA) module to…

Computer Vision and Pattern Recognition · Computer Science 2023-08-21 Qingyu Wang , Duzhen Zhang , Tielin Zhang , Bo Xu

We introduce HiCat (Hybrid Cell Annotation using Transformative embeddings), a novel semi-supervised pipeline for annotating cell types from single-cell RNA sequencing data. HiCat fuses the strengths of supervised learning for known cell…

Biomolecules · Quantitative Biology 2025-08-21 Chang Bi , Kailun Bai , Xing Li , Xuekui Zhang

Depth estimation is a critical task in computer vision, with applications in autonomous navigation, robotics, and augmented reality. Event cameras, which encode temporal changes in light intensity as asynchronous binary spikes, offer unique…

Computer Vision and Pattern Recognition · Computer Science 2025-02-25 Xin Zhang , Liangxiu Han , Tam Sobeih , Lianghao Han , Darren Dancey

We consider two biologically plausible structures, the Spiking Neural Network (SNN) and the self-attention mechanism. The former offers an energy-efficient and event-driven paradigm for deep learning, while the latter has the ability to…

Neural and Evolutionary Computing · Computer Science 2022-11-23 Zhaokun Zhou , Yuesheng Zhu , Chao He , Yaowei Wang , Shuicheng Yan , Yonghong Tian , Li Yuan

Recently, Graph Transformers have emerged as a promising solution to alleviate the inherent limitations of Graph Neural Networks (GNNs) and enhance graph representation performance. Unfortunately, Graph Transformers are computationally…

Neural and Evolutionary Computing · Computer Science 2024-03-26 Yundong Sun , Dongjie Zhu , Yansong Wang , Zhaoshuo Tian , Ning Cao , Gregory O'Hared

Real-world graphs or networks are usually heterogeneous, involving multiple types of nodes and relationships. Heterogeneous graph neural networks (HGNNs) can effectively handle these diverse nodes and edges, capturing heterogeneous…

Neural and Evolutionary Computing · Computer Science 2026-01-07 Buqing Cao , Qian Peng , Xiang Xie , Liang Chen , Min Shi , Jianxun Liu

Single-cell RNA sequencing (scRNA-seq) offers detailed insights into cellular heterogeneity. Recent advancements leverage single-cell large language models (scLLMs) for effective representation learning. These models focus exclusively on…

Machine Learning · Computer Science 2025-06-05 Yaorui Shi , Jiaqi Yang , Changhao Nai , Sihang Li , Junfeng Fang , Xiang Wang , Zhiyuan Liu , Yang Zhang

Cell type annotation is a fundamental step in the analysis of single-cell RNA sequencing (scRNA-seq) data. In practice, human experts often rely on the structure revealed by principal component analysis (PCA) followed by $k$-nearest…

Genomics · Quantitative Biology 2026-02-10 Tianxiang Hu , Chenyi Zhou , Jiaxiang Liu , Jiongxin Wang , Ruizhe Chen , Haoxiang Xia , Gaoang Wang , Jian Wu , Zuozhu Liu

Single-cell RNA sequencing (scRNAseq) is rapidly advancing our understanding of cellular composition within complex tissues and organisms. A major limitation in most scRNAseq analysis pipelines is the reliance on manual annotations to…

Genomics · Quantitative Biology 2022-06-10 A. Ali Heydari , Oscar A. Davalos , Katrina K. Hoyer , Suzanne S. Sindi

Spiking Neural Networks have attracted significant attention in recent years due to their distinctive low-power characteristics. Meanwhile, Transformer models, known for their powerful self-attention mechanisms and parallel processing…

Neural and Evolutionary Computing · Computer Science 2024-12-19 Hangming Zhang , Alexander Sboev , Roman Rybka , Qiang Yu

Single-cell RNA sequencing (scRNA-seq) is essential for unraveling cellular heterogeneity and diversity, offering invaluable insights for bioinformatics advancements. Despite its potential, traditional clustering methods in scRNA-seq data…

Machine Learning · Computer Science 2025-10-01 Ping Xu , Zhiyuan Ning , Meng Xiao , Guihai Feng , Xin Li , Yuanchun Zhou , Pengfei Wang

This paper introduces SpikeFit, a novel training method for Spiking Neural Networks (SNNs) that enables efficient inference on neuromorphic hardware, considering all its stringent requirements: the number of neurons and synapses that can…

Neural and Evolutionary Computing · Computer Science 2025-11-04 Ivan Kartashov , Mariia Pushkareva , Iakov Karandashev

Spiking neural networks (SNNs) offer a promising avenue to implement deep neural networks in a more energy-efficient way. However, the network architectures of existing SNNs for language tasks are still simplistic and relatively shallow,…

Computation and Language · Computer Science 2024-02-22 Changze Lv , Tianlong Li , Jianhan Xu , Chenxi Gu , Zixuan Ling , Cenyuan Zhang , Xiaoqing Zheng , Xuanjing Huang

Transformers have demonstrated outstanding performance across a wide range of tasks, owing to their self-attention mechanism, but they are highly energy-consuming. Spiking Neural Networks have emerged as a promising energy-efficient…

Computer Vision and Pattern Recognition · Computer Science 2025-03-18 Yufei Guo , Xiaode Liu , Yuanpei Chen , Weihang Peng , Yuhan Zhang , Zhe Ma

Spiking neural networks (SNNs) with adaptive synapses reflect core properties of biological neural networks. Speech recognition, as an application involving audio coding and dynamic learning, provides a good test problem to study SNN…

Neural and Evolutionary Computing · Computer Science 2017-03-14 Amirhossein Tavanaei , Anthony S Maida

Spiking neural networks (SNNs) offer an energy-efficient alternative to conventional deep learning by emulating the event-driven processing manner of the brain. Incorporating Transformers with SNNs has shown promise for accuracy. However,…

Neural and Evolutionary Computing · Computer Science 2024-09-05 Yuetong Fang , Ziqing Wang , Lingfeng Zhang , Jiahang Cao , Honglei Chen , Renjing Xu

Spiking Neural Networks (SNNs), known for their biologically plausible architecture, face the challenge of limited performance. The self-attention mechanism, which is the cornerstone of the high-performance Transformer and also a…

Neural and Evolutionary Computing · Computer Science 2024-01-05 Zhaokun Zhou , Kaiwei Che , Wei Fang , Keyu Tian , Yuesheng Zhu , Shuicheng Yan , Yonghong Tian , Li Yuan
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