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Drug recommendation (DR) systems aim to support healthcare professionals in selecting appropriate medications based on patients' medical conditions. State-of-the-art approaches utilize deep learning techniques for improving DR, but fall…

Information Retrieval · Computer Science 2025-11-03 Yu Lin , Zhen Jia , Philipp Christmann , Xu Zhang , Shengdong Du , Tianrui Li

Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) is a technique that enhances Large Language Model (LLM) inference in tasks like Question Answering (QA) by retrieving relevant information from knowledge graphs (KGs). However,…

Artificial Intelligence · Computer Science 2025-09-01 Dongzhuoran Zhou , Yuqicheng Zhu , Xiaxia Wang , Yuan He , Jiaoyan Chen , Steffen Staab , Evgeny Kharlamov

Large Language Models (LLMs) excel at language understanding but remain limited in knowledge-intensive domains due to hallucinations, outdated information, and limited explainability. Text-based retrieval-augmented generation (RAG) helps…

Computation and Language · Computer Science 2026-02-09 Larissa Pusch , Alexandre Courtiol , Tim Conrad

Reasoning over knowledge graphs (KGs) with first-order logic (FOL) queries is challenging due to the inherent incompleteness of real-world KGs and the compositional complexity of logical query structures. Most existing methods rely on…

Computation and Language · Computer Science 2025-12-23 Ziyan Zhang , Chao Wang , Zhuo Chen , Lei Chen , Chiyi Li , Kai Song

Knowledge graphs (KGs) play a crucial role in many applications, such as question answering, but incompleteness is an urgent issue for their broad application. Much research in knowledge graph completion (KGC) has been performed to resolve…

Artificial Intelligence · Computer Science 2023-01-10 Yinyu Lan , Shizhu He , Kang Liu , Jun Zhao

With the rise of large language models (LLMs), they have become instrumental in applications such as Retrieval-Augmented Generation (RAG). Yet evaluating these systems remains bottlenecked by the time and cost of building specialized…

Computation and Language · Computer Science 2026-02-24 Mohammad Amanlou , Erfan Shafiee Moghaddam , Yasaman Amou Jafari , Mahdi Noori , Farhan Farsi , Behnam Bahrak

Recent advances in Large Language Models (LLMs) have positioned them as a prominent solution for Natural Language Processing tasks. Notably, they can approach these problems in a zero or few-shot manner, thereby eliminating the need for…

Machine Learning · Computer Science 2025-05-07 Gerard Pons , Besim Bilalli , Anna Queralt

Knowledge graphs (KGs) contain rich information about world knowledge, entities and relations. Thus, they can be great supplements to existing pre-trained language models. However, it remains a challenge to efficiently integrate information…

Computation and Language · Computer Science 2020-10-05 Donghan Yu , Chenguang Zhu , Yiming Yang , Michael Zeng

Laboratory workflows in pharmaceutical and biomedical research encode substantial tacit knowledge -- expert judgment about failure conditions, decision branching logic, and contextual dependencies -- that remains inaccessible to protocol…

Biomedical knowledge graphs (KGs) encode rich, structured information critical for drug discovery tasks, but extracting meaningful insights from large-scale KGs remains challenging due to their complex structure. Existing biomedical…

Knowledge graphs (KGs) often contain sufficient information to support the inference of new facts. Identifying logical rules not only improves the completeness of a knowledge graph but also enables the detection of potential errors, reveals…

Computation and Language · Computer Science 2025-08-01 Nasim Shirvani-Mahdavi , Devin Wingfield , Amin Ghasemi , Chengkai Li

Knowledge Graphs (KGs) store information in the form of (head, predicate, tail)-triples. To augment KGs with new knowledge, researchers proposed models for KG Completion (KGC) tasks such as link prediction; i.e., answering (h; p; ?) or (?;…

Artificial Intelligence · Computer Science 2022-08-24 Haris Widjaja , Kiril Gashteovski , Wiem Ben Rim , Pengfei Liu , Christopher Malon , Daniel Ruffinelli , Carolin Lawrence , Graham Neubig

In today's globalized economy, comprehensive supply chain visibility is crucial for effective risk management. Achieving visibility remains a significant challenge due to limited information sharing among supply chain partners. This paper…

Information Retrieval · Computer Science 2024-08-16 Sara AlMahri , Liming Xu , Alexandra Brintrup

Adoption of recently developed methods from machine learning has given rise to creation of drug-discovery knowledge graphs (KG) that utilize the interconnected nature of the domain. Graph-based modelling of the data, combined with KG…

Machine Learning · Computer Science 2022-07-27 Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett

Large Language Models (LLMs) have exhibited impressive proficiency in various natural language processing (NLP) tasks, which involve increasingly complex reasoning. Knowledge reasoning, a primary type of reasoning, aims at deriving new…

Computation and Language · Computer Science 2024-07-02 Yifei Zhang , Xintao Wang , Jiaqing Liang , Sirui Xia , Lida Chen , Yanghua Xiao

Electronic health record (EHR) systems present clinicians with vast repositories of clinical information, creating a significant cognitive burden where critical details are easily overlooked. While Large Language Models (LLMs) offer…

Computation and Language · Computer Science 2026-03-17 Samuel Thio , Matthew Lewis , Spiros Denaxas , Richard JB Dobson

This paper proposes a graph-augmented reasoning framework for tobacco pest and disease management that integrates structured domain knowledge into large language models. Building on GraphRAG, we construct a domain-specific knowledge graph…

Computation and Language · Computer Science 2026-02-04 Siyu Li , Chenwei Song , Qi Zhou , Wan Zhou , Xinyi Liu

Developing novel predictive models with complex biomedical information is challenging due to various idiosyncrasies related to heterogeneity, standardization or sparseness of the data. We previously introduced a person-centric ontology to…

Machine Learning · Computer Science 2024-08-30 Christos Theodoropoulos , Natasha Mulligan , Joao Bettencourt-Silva

Electronic medical records contain multi-format electronic medical data that consist of an abundance of medical knowledge. Facing with patient's symptoms, experienced caregivers make right medical decisions based on their professional…

Databases · Computer Science 2017-07-25 Meng Wang , Jiaheng Zhang , Jun Liu , Wei Hu , Sen Wang , Xue Li , Wenqiang Liu

Knowledge graph-based dialogue systems can narrow down knowledge candidates for generating informative and diverse responses with the use of prior information, e.g., triple attributes or graph paths. However, most current knowledge graph…

Computation and Language · Computer Science 2020-04-21 Hongcai Xu , Junpeng Bao , Junqing Wang
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