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We present a multi-objective binder design paradigm based on instruction fine-tuning and direct preference optimization (DPO) of autoregressive protein language models (pLMs). Multiple design objectives are encoded in the language model…

Biological Physics · Physics 2024-03-08 Pouria Mistani , Venkatesh Mysore

Large language models (LLMs) demonstrate impressive performance but lack the flexibility to adapt to human preferences quickly without retraining. In this work, we introduce Test-time Preference Optimization (TPO), a framework that aligns…

Computation and Language · Computer Science 2025-01-23 Yafu Li , Xuyang Hu , Xiaoye Qu , Linjie Li , Yu Cheng

Multimodal Large Language Models (MLLMs) excel in generating responses based on visual inputs. However, they often suffer from a bias towards generating responses similar to their pretraining corpus, overshadowing the importance of visual…

Computation and Language · Computer Science 2024-04-04 Renjie Pi , Tianyang Han , Wei Xiong , Jipeng Zhang , Runtao Liu , Rui Pan , Tong Zhang

While large-scale unsupervised language models (LMs) learn broad world knowledge and some reasoning skills, achieving precise control of their behavior is difficult due to the completely unsupervised nature of their training. Existing…

Machine Learning · Computer Science 2024-07-31 Rafael Rafailov , Archit Sharma , Eric Mitchell , Stefano Ermon , Christopher D. Manning , Chelsea Finn

Direct Preference Optimization (DPO) have emerged as a popular method for aligning Large Language Models (LLMs) with human preferences. While DPO effectively preserves the relative ordering between chosen and rejected responses through…

Computation and Language · Computer Science 2025-06-05 Lin Sun , Chuang Liu , Peng Liu , Bingyang Li , Weijia Lu , Ning Wu

Preference alignment in Large Language Models (LLMs) has significantly improved their ability to adhere to human instructions and intentions. However, existing direct alignment algorithms primarily focus on relative preferences and often…

Machine Learning · Computer Science 2025-05-13 Shenao Zhang , Zhihan Liu , Boyi Liu , Yufeng Zhang , Yingxiang Yang , Yongfei Liu , Liyu Chen , Tao Sun , Zhaoran Wang

Large Language Models (LLMs) have demonstrated unprecedented generative capabilities, yet their alignment with human values remains critical for ensuring helpful and harmless deployments. While Reinforcement Learning from Human Feedback…

While finetuning language models from pairwise preferences has proven remarkably effective, the underspecified nature of natural language presents critical challenges. Direct preference feedback is uninterpretable, difficult to provide…

Computation and Language · Computer Science 2024-11-07 Silviu Pitis , Ziang Xiao , Nicolas Le Roux , Alessandro Sordoni

Direct Preference Optimization (DPO) is a powerful paradigm for aligning Large Language Models (LLMs) to human preferences in Machine Translation (MT), but current methods are hindered by two fundamental challenges: (1) flawed reward…

Computation and Language · Computer Science 2025-10-16 Hao Wang , Linlong Xu , Heng Liu , Yangyang Liu , Xiaohu Zhao , Bo Zeng , Liangying Shao , Longyue Wang , Weihua Luo , Kaifu Zhang

Aligning large language models with human preferences has emerged as a critical focus in language modeling research. Yet, integrating preference learning into Text-to-Image (T2I) generative models is still relatively uncharted territory.…

Computer Vision and Pattern Recognition · Computer Science 2024-06-11 Yi Gu , Zhendong Wang , Yueqin Yin , Yujia Xie , Mingyuan Zhou

The inverse folding problem, aiming to design amino acid sequences that fold into desired three-dimensional structures, is pivotal for various biotechnological applications. Here, we introduce a novel approach leveraging Direct Preference…

Machine Learning · Computer Science 2025-06-04 Junde Xu , Zijun Gao , Xinyi Zhou , Jie Hu , Xingyi Cheng , Le Song , Guangyong Chen , Pheng-Ann Heng , Jiezhong Qiu

Self-alignment, whereby models learn to improve themselves without human annotation, is a rapidly growing research area. However, existing techniques often fail to improve complex reasoning tasks due to the difficulty of assigning correct…

Computation and Language · Computer Science 2025-07-08 Archiki Prasad , Weizhe Yuan , Richard Yuanzhe Pang , Jing Xu , Maryam Fazel-Zarandi , Mohit Bansal , Sainbayar Sukhbaatar , Jason Weston , Jane Yu

Alignment of large language models (LLMs) has predominantly relied on pairwise preference optimization, where annotators select the better of two responses to a prompt. While simple, this approach overlooks the opportunity to learn from…

Machine Learning · Computer Science 2026-02-11 Yuxuan Tang , Yifan Feng

Molecular language modeling is an effective approach to generating novel chemical structures. However, these models do not \emph{a priori} encode certain preferences a chemist may desire. We investigate the use of fine-tuning using Direct…

Machine Learning · Statistics 2023-10-20 Ryan Park , Ryan Theisen , Navriti Sahni , Marcel Patek , Anna Cichońska , Rayees Rahman

Fine-tuning large language models (LLMs) on human preferences, typically through reinforcement learning from human feedback (RLHF), has proven successful in enhancing their capabilities. However, ensuring the safety of LLMs during…

Artificial Intelligence · Computer Science 2025-04-09 Wenxuan Zhang , Philip H. S. Torr , Mohamed Elhoseiny , Adel Bibi

Direct Preference Optimization (DPO) has become a popular approach for aligning language models using pairwise preferences. However, in practical post-training pipelines, on-policy generation typically yields multiple candidate responses…

Machine Learning · Computer Science 2025-06-23 Taneesh Gupta , Rahul Madhavan , Xuchao Zhang , Nagarajan Natarajan , Chetan Bansal , Saravan Rajmohan

Fine-tuning large language models (LLMs) to align with human preferences has driven the success of systems such as Gemini and ChatGPT. However, approaches like Reinforcement Learning from Human Feedback (RLHF) remain computationally…

Machine Learning · Computer Science 2026-05-25 Miria Feng , Mert Pilanci

Direct Preference Optimisation (DPO) has emerged as a powerful method for aligning Large Language Models (LLMs) with human preferences, offering a stable and efficient alternative to approaches that use Reinforcement learning via Human…

Artificial Intelligence · Computer Science 2025-05-06 Sarvesh Shashidhar , Ritik , Nachiketa Patil , Suraj Racha , Ganesh Ramakrishnan

We introduce ConfPO, a method for preference learning in Large Language Models (LLMs) that identifies and optimizes preference-critical tokens based solely on the training policy's confidence, without requiring any auxiliary models or…

Computation and Language · Computer Science 2025-06-13 Hee Suk Yoon , Eunseop Yoon , Mark Hasegawa-Johnson , Sungwoong Kim , Chang D. Yoo

Resource-efficient training optimization techniques are becoming increasingly important as the size of large language models (LLMs) continues to grow. In particular, batch packing is commonly used in pre-training and supervised fine-tuning…

Computation and Language · Computer Science 2026-03-02 Jaekyung Cho