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LLM-based tools are automating more software development tasks at a rapid pace, but there is no rigorous way to evaluate how different architectural choices -- prompts, skills, tools, multi-agent setups -- materially affect both capability…

Software Engineering · Computer Science 2026-02-10 Micah Villmow

Corpus distillation for biomedical large language models (LLMs) seeks to address the pressing challenge of insufficient quantity and quality in open-source annotated scientific corpora, which remains a bottleneck for effective LLM training…

Computation and Language · Computer Science 2025-12-19 Meng Xiao , Xunxin Cai , Qingqing Long , Chengrui Wang , Yuanchun Zhou , Hengshu Zhu

The effective application of foundation models to translational research in immune-mediated diseases requires multimodal patient-level representations that can capture complex phenotypes emerging from multicellular interactions. Yet most…

Multimodal artificial intelligence (AI) systems have the potential to enhance clinical decision-making by interpreting various types of medical data. However, the effectiveness of these models across all medical fields is uncertain. Each…

Robotic research is inherently challenging, requiring expertise in diverse environments and control algorithms. Adapting algorithms to new environments often poses significant difficulties, compounded by the need for extensive…

Robotics · Computer Science 2025-04-10 Halid Abdulrahim Kadi , Kasim Terzić

We introduce Agentic Reasoning, a framework that enhances large language model (LLM) reasoning by integrating external tool-using agents. Agentic Reasoning dynamically leverages web search, code execution, and structured memory to address…

Artificial Intelligence · Computer Science 2025-07-16 Junde Wu , Jiayuan Zhu , Yuyuan Liu , Min Xu , Yueming Jin

In clinical practice, radiology reporting is an essential yet complex, time-intensive, and error-prone task, particularly for 3D medical images. Existing automated approaches based on medical vision-language models primarily focus on…

Artificial Intelligence · Computer Science 2026-03-02 Yongrui Yu , Zhongzhen Huang , Linjie Mu , Shaoting Zhang , Xiaofan Zhang

Agentic systems have recently emerged as a promising tool to automate literature-based ideation. However, current systems often remain black-box, with limited transparency or control for researchers. Our work introduces TrustResearcher, a…

Multiagent Systems · Computer Science 2026-01-27 Jiawei Zhou , Ruicheng Zhu , Mengshi Chen , Jianwei Wang , Kai Wang

Despite being widely used to support clinical care, general-purpose large multimodal models (LMMs) have generally shown poor or inconclusive performance in medical image interpretation, particularly in pathology, where gigapixel images are…

Computer Vision and Pattern Recognition · Computer Science 2025-11-26 Thomas A. Buckley , Kian R. Weihrauch , Katherine Latham , Andrew Z. Zhou , Padmini A. Manrai , Arjun K. Manrai

While Large Language Models (LLMs) achieve expert-level performance on standard medical benchmarks through single-hop factual recall, they severely struggle with the complex, multi-hop diagnostic reasoning required in real-world clinical…

Computation and Language · Computer Science 2026-03-16 Xing Zi , Xinying Zhou , Jinghao Xiao , Catarina Moreira , Mukesh Prasad

Deep neural networks are increasingly applied in automated histopathology. Yet, whole-slide images (WSIs) are often acquired at gigapixel sizes, rendering them computationally infeasible to analyze entirely at high resolution. Diagnostic…

Image and Video Processing · Electrical Eng. & Systems 2026-02-10 Tarun G , Naman Malpani , Gugan Thoppe , Sridharan Devarajan

Integrating symbolic constraints into deep learning models could make them more robust, interpretable, and data-efficient. Still, it remains a time-consuming and challenging task. Existing frameworks like DomiKnowS help this integration by…

Artificial Intelligence · Computer Science 2026-01-05 Aliakbar Nafar , Chetan Chigurupati , Danial Kamali , Hamid Karimian , Parisa Kordjamshidi

Scoring functions remain the principal bottleneck in molecular docking: they routinely fail to rank near-native poses above decoys, and their composite single-score design obscures the physicochemical basis of each ranking error. We present…

Biomolecules · Quantitative Biology 2026-05-06 Sofiene Khiari , Amr H. Mahmoud , Markus A. Lill

Recent progress in deep research systems has been impressive, but evaluation still lags behind real user needs. Existing benchmarks predominantly assess final reports using fixed rubrics, failing to evaluate the underlying research process.…

The development of computational pathology lies in the consensus that pathological characteristics of tumors are significant guidance for cancer diagnostics. Most existing research focuses on the inner-contextual information within each WSI…

Computer Vision and Pattern Recognition · Computer Science 2024-10-15 Jun Shi , Tong Shu , Zhiguo Jiang , Wei Wang , Haibo Wu , Yushan Zheng

Enabling large language models to scale and reliably use hundreds of tools is critical for real-world applications, yet challenging due to the inefficiency and error accumulation inherent in flat tool-calling architectures. To address this,…

Computation and Language · Computer Science 2026-04-14 Chengrui Huang , Junshuo Zhang , Zhiyuan Ma , Xikun Wang , Ximeng Wang , Menghua Jiang , Gang Zeng , Zhaobing Han , Shen Gao , Shuo Shang

We present HippoCamp, a new benchmark designed to evaluate agents' capabilities on multimodal file management. Unlike existing agent benchmarks that focus on tasks like web interaction, tool use, or software automation in generic settings,…

Artificial Intelligence · Computer Science 2026-04-02 Zhe Yang , Shulin Tian , Kairui Hu , Shuai Liu , Hoang-Nhat Nguyen , Yichi Zhang , Zujin Guo , Mengying Yu , Zinan Zhang , Jingkang Yang , Chen Change Loy , Ziwei Liu

Although agentic workflows have demonstrated strong potential for solving complex tasks, existing automated generation methods remain inefficient and underperform, as they rely on predefined operator libraries and homogeneous LLM-only…

Artificial Intelligence · Computer Science 2026-03-23 Beibei Xu , Yutong Ye , Chuyun Shen , Yingbo Zhou , Cheng Chen , Mingsong Chen

Searching for potential active compounds in large databases is a necessary step to reduce time and costs in modern drug discovery pipelines. Such virtual screening methods seek to provide predictions that allow the search space to be…

Biomolecules · Quantitative Biology 2023-05-23 Rafael Mena-Yedra , Juana L. Redondo , Horacio Pérez-Sánchez , Pilar M. Ortigosa

Artificial intelligence (AI), machine learning, and deep learning (DL) methods are becoming increasingly important in the field of biomedical image analysis. However, to exploit the full potential of such methods, a representative number of…