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PyUnfold is a Python package for incorporating imperfections of the measurement process into a data analysis pipeline. In an ideal world, we would have access to the perfect detector: an apparatus that makes no error in measuring a desired…

Data Analysis, Statistics and Probability · Physics 2018-06-12 James Bourbeau , Zigfried Hampel-Arias

Similarity measures are fundamental tools for quantifying the alignment between artificial and biological systems. However, the diversity of similarity measures and their varied naming and implementation conventions makes it challenging to…

Neurons and Cognition · Quantitative Biology 2025-09-09 Nathan Cloos , Guangyu Robert Yang , Christopher J. Cueva

Today, tool-calling agents are commonly evaluated or tested on static datasets of execution traces, including input commands, agent responses, and associated tool calls. However, internal production datasets are often insufficient or…

Computation and Language · Computer Science 2026-05-22 Shuaiqi Wang , Aadyaa Maddi , Zinan Lin , Giulia Fanti

TRUST is an open-source software tool developed for data-driven controller synthesis of dynamical systems with unknown mathematical models, ensuring either stability or safety properties. By collecting only a single input-state trajectory…

Systems and Control · Electrical Eng. & Systems 2025-03-12 Jamie Gardner , Ben Wooding , Amy Nejati , Abolfazl Lavaei

nimCSO is a high-performance tool implementing several methods for selecting components (data dimensions) in compositional datasets, which optimize the data availability and density for applications such as machine learning. Making said…

Materials Science · Physics 2024-12-17 Adam M. Krajewski , Arindam Debnath , Wesley F. Reinhart , Allison M. Beese , Zi-Kui Liu

Mathematical models allow us to gain a deeper understanding of real-world dynamical systems. One of the most powerful mathematical frameworks for modeling real-world phenomena are systems of differential equations. In the majority of fields…

Disordered Systems and Neural Networks · Physics 2023-05-02 Richard Gast , Thomas R. Knösche , Ann Kennedy

The analysis of fairness in process mining is a significant aspect of data-driven decision-making, yet the advancement in this field is constrained due to the scarcity of event data that incorporates fairness considerations. To bridge this…

Databases · Computer Science 2023-06-21 Timo Pohl , Alessandro Berti , Mahnaz Sadat Qafari , Wil M. P. van der Aalst

A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were proposed in 2016 as prerequisites for proper data management and stewardship, with the goal of enabling the reusability of scholarly data. The…

From a data perspective, the materials mechanics field is characterized by sparsity of available data, mainly due to the strong microstructure-sensitivity of properties like strength, fracture toughness, and fatigue limit. This requires…

Computational Physics · Physics 2024-11-19 Ronak Shoghi , Alexander Hartmaier

PySCF is a general-purpose electronic structure platform designed from the ground up to emphasize code simplicity, both to aid new method development, as well as for flexibility in computational workflow. The package provides a wide range…

We present PyNeuralFx, an open-source Python toolkit designed for research on neural audio effect modeling. The toolkit provides an intuitive framework and offers a comprehensive suite of features, including standardized implementation of…

Sound · Computer Science 2024-08-13 Yen-Tung Yeh , Wen-Yi Hsiao , Yi-Hsuan Yang

For agentic systems to use external tools to solve complex, long-horizon tasks, we need a large set of diverse and controllable tool-use environments. We introduce SynthTools, a fully LLM-based pipeline spanning the entire lifecycle:…

Artificial Intelligence · Computer Science 2026-05-28 Tommaso Castellani , Naimeng Ye , Daksh Mittal , Thomson Yen , Emmanouil Koukoumidis , William Zeng , Hongseok Namkoong

We present FairHealth, an open-source Python library that provides a unified, modular framework for trustworthy machine learning in healthcare applications, with particular focus on low-resource and low-income country (LMIC) settings such…

Machine Learning · Computer Science 2026-05-12 Farjana Yesmin

Physics Engines (PEs) are fundamental software frameworks that simulate physical interactions in applications ranging from entertainment to safety-critical systems. Despite their importance, PEs suffer from physics failures, deviations from…

Computer Vision and Pattern Recognition · Computer Science 2025-07-31 Shuqing Li , Qiang Chen , Xiaoxue Ren , Michael R. Lyu

The Python package fluidsim is introduced in this article as an extensible framework for Computational Fluid Mechanics (CFD) solvers. It is developed as a part of FluidDyn project (Augier et al., 2018), an effort to promote open-source and…

Computational Engineering, Finance, and Science · Computer Science 2019-07-31 Ashwin Vishnu Mohanan , Cyrille Bonamy , Miguel Calpe Linares , Pierre Augier

ScopeSim is a flexible multipurpose instrument data simulation framework built in Python. It enables both raw and reduced observation data to be simulated for a wide range of telescopes and instruments quickly and efficiently on a personal…

Instrumentation and Methods for Astrophysics · Physics 2021-09-29 Kieran Leschinski , Hugo Buddelmeijer , Oliver Czoske , Miguel Verdugo , Gijs Verdoes-Kleijn , Werner Zeilinger

Predictive systems, in particular machine learning algorithms, can take important, and sometimes legally binding, decisions about our everyday life. In most cases, however, these systems and decisions are neither regulated nor certified.…

Machine Learning · Computer Science 2022-09-09 Kacper Sokol , Alexander Hepburn , Rafael Poyiadzi , Matthew Clifford , Raul Santos-Rodriguez , Peter Flach

Functional near-infrared spectroscopy (fNIRS) and diffuse optical tomography (DOT) are rapidly evolving toward wearable, multimodal, and data-driven, AI-supported neuroimaging in the everyday world. However, current analytical tools are…

Signal Processing · Electrical Eng. & Systems 2026-01-12 E. Middell , L. Carlton , S. Moradi , T. Codina , T. Fischer , J. Cutler , S. Kelley , J. Behrendt , T. Dissanayake , N. Harmening , M. A. Yücel , D. A. Boas , A. von Lühmann

Inference on time series data is a common requirement in many scientific disciplines and internet of things (IoT) applications, yet there are few resources available to domain scientists to easily, robustly, and repeatably build such…

Mathematical Software · Computer Science 2016-09-16 Brett Naul , Stéfan van der Walt , Arien Crellin-Quick , Joshua S. Bloom , Fernando Pérez

This paper reports the development of a Python Non-Uniform Fast Fourier Transform (PyNUFFT) package, which accelerates non-Cartesian image reconstruction on heterogeneous platforms. Scientific computing with Python encompasses a mature and…

Medical Physics · Physics 2017-10-10 Jyh-Miin Lin
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