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Motivated by the need for realistic, dynamically self-consistent, evolving galaxy models that avoid the complexity of full, and zoom-in, cosmological simulations, we have developed NEXUS, an integral framework to create and evolve synthetic…

Scientific foundation models hold great promise for advancing nuclear and particle physics by improving analysis precision and accelerating discovery. Yet, progress in this field is often limited by the lack of openly available large scale…

Data Analysis, Statistics and Probability · Physics 2025-09-09 Shuhang Li , Yi Huang , David Park , Xihaier Luo , Haiwang Yu , Yeonju Go , Christopher Pinkenburg , Yuewei Lin , Shinjae Yoo , Joseph Osborn , Christof Roland , Jin Huang , Yihui Ren

We propose a framework to develop cyber solutions to support the remote steering of science instruments and measurements collection over instrument-computing ecosystems. It is based on provisioning separate data and control connections at…

Other Computer Science · Computer Science 2023-07-14 Anees Al-Najjar , Nageswara S. V. Rao , Ramanan Sankaran , Helia Zandi , Debangshu Mukherjee , Maxim Ziatdinov , Craig Bridges

Three-dimensional topology optimization (TO) is a powerful technique in engineering design, but readily usable, open-source implementations remain limited within the popular Python scientific environment. This paper introduces PyTopo3D, a…

Graphics · Computer Science 2025-04-09 Jihoon Kim , Namwoo Kang

In Software Engineering, some of the most critical activities are maintenance and evolution. However, to perform both with quality, minimizing impacts and risks, developers need to analyze and identify where the main problems come from…

Software Engineering · Computer Science 2020-08-11 Guilherme Lacerda , Fabio Petrillo , Marcelo Pimenta

Operationalizing the EU AI Act requires clear technical documentation to ensure AI systems are transparent, traceable, and accountable. Existing documentation templates for AI systems do not fully cover the entire AI lifecycle while meeting…

Machine Learning · Computer Science 2025-08-13 Laura Lucaj , Alex Loosley , Hakan Jonsson , Urs Gasser , Patrick van der Smagt

This study introduces Pedophysics, an open-source Python package designed to facilitate solutions for users who work in the field of soil assessment using near-surface geophysical electromagnetic techniques. At the core of this software is…

Geophysics · Physics 2024-03-13 Gaston Mendoza Veirana , Philippe De Smedt , Jeroen Verhegge , Wim Cornelis

Ecological research increasingly relies on integrating heterogeneous datasets and knowledge to explain and predict complex phenomena. Yet, differences in data types, terminology, and documentation often hinder interoperability, reuse, and…

The needs to assess robust performances for complex systems and to answer tighter regulatory processes (security, safety, environmental control, and health impacts, etc.) have led to the emergence of a new industrial simulation challenge:…

Computation · Statistics 2023-12-05 Michaël Baudin , Anne Dutfoy , Bertrand Iooss , Anne-Laure Popelin

Scientific computing libraries, either being in-house or open-source, have experienced enormous progress in both engineering and scientific research. It is therefore essential to ensure that the modifications in the source code aroused by…

Computational Physics · Physics 2023-05-12 Bo Zhang , Chi Zhang , Xiangyu Hu

Normalizing flows model probability distributions through an expressive tractable density. They transform a simple base distribution, such as a Gaussian, through a sequence of invertible functions, which are referred to as layers. These…

The open-source PyNX toolkit [Favre-Nicolin et al (2011) arXiv:1010.2641, Mandula et al (2016)] has been extended to provide tools for coherent X-ray imaging data analysis and simulation. All calculations can be executed on graphical…

NeXus is a joint effort of both the synchrotron and neutron scattering community to devlop a common data exchange format based on HDF. In order to simplify access to NeXus-files a NeXus-API is provided. This NeXus-API has been redesigned…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Mark Koennecke , Uwe Filges

Selecting third-party software packages in open-source ecosystems like Python is challenging due to the large number of alternatives and limited transparent evidence for comparison. Generative AI tools are increasingly used in development…

FEniCS Mechanics is a Python package to facilitate computational mechanics simulations. The Python library dolfin, from the FEniCS Project, is used to formulate and numerically solve the problem in variational form. The general balance laws…

Computational Engineering, Finance, and Science · Computer Science 2019-01-30 Miguel A. Rodriguez , Christoph M. Augustin , Shawn C. Shadden

We present PyXtal FF, a package based on Python programming language, for developing machine learning potentials (MLPs). The aim of PyXtal FF is to promote the application of atomistic simulations by providing several choices of structural…

Computational Physics · Physics 2023-01-03 Howard Yanxon , David Zagaceta , Binh Tang , David Matteson , Qiang Zhu

Materials science inherently spans disciplines: experimentalists use advanced microscopy to uncover micro- and nanoscale structure, while theorists and computational scientists develop models that link processing, structure, and properties.…

Machine Learning · Computer Science 2026-03-25 Simon Daubner , Alexander E. Cohen , Benjamin Dörich , Samuel J. Cooper

The FAIR (Findable, Accessible, Interoperable, and Reusable) data principles [1] promote the interoperability of scientific data by encouraging the use of persistent identifiers, standardized vocabularies, and formal metadata structures.…

Empirical potential structure refinement (EPSR) is a neutron scattering data analysis algorithm and a software package. It was developed by the British spallation neutron source (ISIS) Disordered Materials Group in 1980s, and aims to…

Computational Physics · Physics 2021-02-24 Changli Ma , He Cheng , Taisen Zuo , Guisheng Jiao , Zehua Han

PaPy, which stands for parallel pipelines in Python, is a highly flexible framework that enables the construction of robust, scalable workflows for either generating or processing voluminous datasets. A workflow is created from user-written…

Programming Languages · Computer Science 2014-07-17 Marcin Cieslik , Cameron Mura
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