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The accurate screening of candidate drug ligands against target proteins through computational approaches is of prime interest to drug development efforts. Such virtual screening depends in part on methods to predict the binding affinity…

Machine Learning · Computer Science 2024-10-22 Ho-Joon Lee , Prashant S. Emani , Mark B. Gerstein

The paper presents Multi-layer Auto Resonance Networks (ARN), a new neural model, for image recognition. Neurons in ARN, called Nodes, latch on to an incoming pattern and resonate when the input is within its 'coverage.' Resonance allows…

Computer Vision and Pattern Recognition · Computer Science 2020-10-12 Shilpa Mayannavar , Uday Wali , V M Aparanji

Recurrent neural networks (RNNs) have recently achieved remarkable successes in a number of applications. However, the huge sizes and computational burden of these models make it difficult for their deployment on edge devices. A practically…

Machine Learning · Computer Science 2019-12-10 Liangjian Wen , Xuanyang Zhang , Haoli Bai , Zenglin Xu

Since the earliest proposals for artificial neural network (ANN) models of the mind and brain, critics have pointed out key weaknesses in these models compared to human cognitive abilities. Here we review recent work that uses metalearning…

Artificial Intelligence · Computer Science 2025-09-17 Kazuki Irie , Brenden M. Lake

Pre-trained models have been successful in many protein engineering tasks. Most notably, sequence-based models have achieved state-of-the-art performance on protein fitness prediction while structure-based models have been used…

Machine Learning · Computer Science 2023-07-25 Antonia Boca , Simon Mathis

Recent advances in machine-learning interatomic potentials have enabled the efficient modeling of complex atomistic systems with an accuracy that is comparable to that of conventional quantum mechanics based methods. At the same time, the…

Materials Science · Physics 2021-05-06 April M. Miksch , Tobias Morawietz , Johannes Kästner , Alexander Urban , Nongnuch Artrith

Feed-forward, fully-connected Artificial Neural Networks (ANNs) or the so-called Multi-Layer Perceptrons (MLPs) are well-known universal approximators. However, their learning performance varies significantly depending on the function or…

Computer Vision and Pattern Recognition · Computer Science 2019-10-21 Serkan Kiranyaz , Turker Ince , Alexandros Iosifidis , Moncef Gabbouj

Deep neural networks typically treat nonlinearities as fixed primitives (e.g., ReLU), limiting both interpretability and the granularity of control over the induced function class. While recent additive models (like KANs) attempt to address…

Machine Learning · Computer Science 2026-02-05 Jusheng Zhang , Ningyuan Liu , Qinhan Lyu , Jing Yang , Keze Wang

We propose an optimized parameter set for protein secondary structure prediction using three layer feed forward back propagation neural network. The methodology uses four parameters viz. encoding scheme, window size, number of neurons in…

Biomolecules · Quantitative Biology 2018-02-02 Jyotshna Dongardivev , Siby Abraham

Artificial neural networks (ANNs) represent a fundamentally connectionnist and distributed approach to computing, and as such they differ from classical computers that utilize the von Neumann architecture. This has revived research interest…

Emerging Technologies · Computer Science 2024-10-03 Anas Skalli , Mirko Goldmann , Nasibeh Haghighi , Stephan Reitzenstein , James A. Lott , Daniel Brunner

Approximate Nearest Neighbour (ANN) search is a fundamental problem in information retrieval, underpinning large-scale applications in computer vision, natural language processing, and cross-modal search. Hashing-based methods provide an…

Information Retrieval · Computer Science 2025-10-07 Sean Moran

Artificial neural network pruning is a method in which artificial neural network sizes can be reduced while attempting to preserve the predicting capabilities of the network. This is done to make the model smaller or faster during inference…

Machine Learning · Computer Science 2025-05-21 Alexandre Broggi , Nathaniel Bastian , Lance Fiondella , Gokhan Kul

Attention-based models trained on protein sequences have demonstrated incredible success at classification and generation tasks relevant for artificial intelligence-driven protein design. However, we lack a sufficient understanding of how…

Machine Learning · Computer Science 2022-06-29 Erik Nijkamp , Jeffrey Ruffolo , Eli N. Weinstein , Nikhil Naik , Ali Madani

Artificial neural networks (ANNs) are essential tools in machine learning that have drawn increasing attention in neuroscience. Besides offering powerful techniques for data analysis, ANNs provide a new approach for neuroscientists to build…

Neurons and Cognition · Quantitative Biology 2020-09-25 Guangyu Robert Yang , Xiao-Jing Wang

Protein solubility plays a critical role in improving production yield of recombinant proteins in biocatalyst and pharmaceutical field. To some extent, protein solubility can represent the function and activity of biocatalysts which are…

Quantitative Methods · Quantitative Biology 2018-11-20 X. Han , L. Zhang , K. Zhou , X. Wang

Artificial neural network (ANN) ability to learn, correct errors, and transform a large amount of raw data into useful medical decisions for treatment and care have increased its popularity for enhanced patient safety and quality of care.…

Machine Learning · Computer Science 2021-12-08 Muhammad Azeem , Shumaila Javaid , Hamza Fahim , Nasir Saeed

This study presents a novel model for invertible sentence embeddings using a residual recurrent network trained on an unsupervised encoding task. Rather than the probabilistic outputs common to neural machine translation models, our…

Computation and Language · Computer Science 2023-04-07 Jeremy Wilkerson

In the present paper a newer application of Artificial Neural Network (ANN) has been developed i.e., predicting response-function results of electrical-mechanical system through ANN. This method is specially useful to complex systems for…

Neural and Evolutionary Computing · Computer Science 2011-11-09 R. C. Gupta , Ankur Agarwal , Ruchi Gupta , Sanjay Gupta

Convolutional neural network (CNN) is widely used in computer vision applications. In the networks that deal with images, CNNs are the most time-consuming layer of the networks. Usually, the solution to address the computation cost is to…

Computer Vision and Pattern Recognition · Computer Science 2019-11-26 Meisam Rakhshanfar

Traditionally, an artificial neural network (ANN) is trained slowly by a gradient descent algorithm such as the backpropagation algorithm since a large number of hyperparameters of the ANN need to be fine-tuned with many training epochs. To…

Machine Learning · Computer Science 2020-01-27 Luna M. Zhang
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