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Phase I dose-finding trials in oncology seek to find the maximum tolerated dose (MTD) of a drug under a specific schedule. Evaluating drug-schedules aims at improving treatment safety while maintaining efficacy. However, while we can…

Foundation model reliability assessment typically requires thousands of evaluation examples, making it computationally expensive and time-consuming for real-world deployment. We introduce microprobe, a novel approach that achieves…

Artificial Intelligence · Computer Science 2025-12-25 Aayam Bansal , Ishaan Gangwani

There is a growing need for fast and accurate methods for testing developmental neurotoxicity across several chemical exposure sources. Current approaches, such as in vivo animal studies, and assays of animal and human primary cell…

Quantitative Methods · Quantitative Biology 2020-02-26 Finn Kuusisto , Vitor Santos Costa , Zhonggang Hou , James Thomson , David Page , Ron Stewart

Systems that answer questions by reviewing the scientific literature are becoming increasingly feasible. To draw reliable conclusions, these systems should take into account the quality of available evidence from different studies, placing…

Computation and Language · Computer Science 2025-09-23 Jianyou Wang , Weili Cao , Longtian Bao , Youze Zheng , Gil Pasternak , Kaicheng Wang , Xiaoyue Wang , Ramamohan Paturi , Leon Bergen

Recent advances in generative biology have enabled the design of novel proteins, creating significant opportunities for drug discovery while also introducing new risks, including the potential development of synthetic bioweapons. Existing…

Quantitative Methods · Quantitative Biology 2025-09-04 Jonathan Feldman , Tal Feldman

We introduce MoULDyS, that implements efficient offline and online monitoring algorithms of black-box cyber-physical systems w.r.t. safety properties. MoULDyS takes as input an uncertain log (with noisy and missing samples), as well as a…

Systems and Control · Electrical Eng. & Systems 2024-07-25 Bineet Ghosh , Étienne André

Objective: To describe the design and early clinical evaluation of The Daily Dose (TDD), an LLM-driven, automated clinical summarization and clinical-trial identification system integrated into routine radiation oncology practice. Design:…

This review article discusses current technological advances in biomedical devices,emphasizing cardiovascular and ophthalmic application diagnostic,monitoring, and prosthetic instruments and systems. The scope encompasses various aspects,…

Medical Physics · Physics 2024-01-17 Shankar M

Antimony is a high-level, human-readable text-based language designed for defining and sharing models in the systems biology community. It enables scientists to describe biochemical networks and systems using a simple and intuitive syntax.…

Quantitative Methods · Quantitative Biology 2024-05-27 Lucian Smith , Herbert M Sauro

This paper considers the problem of model selection within the context of finite element model updating. Given that a number of FEM updating models, with different updating parameters, can be designed, this paper proposes using the Bayesian…

Computation · Statistics 2008-10-16 Linda Mthembu , Tshilidzi Marwala , Michael I. Friswell , Sondipon Adhikari

Biological relation networks contain rich information for understanding the biological mechanisms behind the relationship of entities such as genes, proteins, diseases, and chemicals. The vast growth of biomedical literature poses…

Computation and Language · Computer Science 2025-01-27 Po-Ting Lai , Chih-Hsuan Wei , Shubo Tian , Robert Leaman , Zhiyong Lu

With increased penetration of new technology in the distribution systems such as renewable energy resources, flexible resources, and information and communication technology, the distribution systems become more complex and dynamic. The…

Systems and Control · Electrical Eng. & Systems 2021-11-03 Stine Fleischer Myhre , Olav Bjarte Fosso , Poul Einar Heegaard , Oddbjørn Gjerde

RNA sequencing techniques, like bulk RNA-seq and Single Cell (sc) RNA-seq, are critical tools for the biologist looking to analyze the genetic activity/transcriptome of a tissue or cell during an experimental procedure. Platforms like…

Genomics · Quantitative Biology 2024-07-08 Devam Mondal , Atharva Inamdar

The separate evaluation for males and females is the recent standard in in-vivo toxicology for dose or treatment effects using Dunnett tests. The alternative pre-test for sex-by-treatment interaction is problematic. Here a joint test is…

Applications · Statistics 2020-11-11 Ludwig A. Hothorn

As large language models (LLMs) become ubiquitous, parameter-efficient fine-tuning methods and safety-first defenses have proliferated rapidly. However, the number of approaches and their recent increase have resulted in diverse…

Machine Learning · Computer Science 2025-06-03 Saad Hossain , Samanvay Vajpayee , Sirisha Rambhatla

In recent years there have been a lot of interest to test for similarity between biological drug products, commonly known as biologics. Biologics are large and complex molecule drugs that are produced by living cells and hence these are…

Methodology · Statistics 2019-02-21 Lin Dong , Sujit K. Ghosh

Computational methods for assessing the likely impacts of mutations, known as variant effect predictors (VEPs), are widely used in the assessment and interpretation of human genetic variation, as well as in other applications like protein…

1. Understanding the mechanisms underlying biological systems, and ultimately, predicting their behaviours in a changing environment requires overcoming the gap between mathematical models and experimental or observational data.…

Quantitative Methods · Quantitative Biology 2017-04-19 Philipp H Boersch-Supan , Sadie J Ryan , Leah R Johnson

Reliability and availability analysis are essential in dependable critical embedded systems. The classical implementation of dependability for an embedded system relies on merging both fundamental structures with the required dependability…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-14 Mahmoud I. Banat , Belal H. Sababha , Sami Al-Hamdan

As the robotics systems increasingly integrate into daily life, from smart home assistants to the new-wave of industrial automation systems (Industry 4.0), there's an increasing need to bridge the gap between complex robotic systems and…

Robotics · Computer Science 2025-07-11 Kavindie Katuwandeniya , Samith Rajapaksha Jayasekara Widhanapathirana