English
Related papers

Related papers: Biomedical Hypothesis Explainability with Graph-Ba…

200 papers

Large language models (LLMs) excel on general tasks yet still hallucinate in high-barrier domains such as pathology. Prior work often relies on domain fine-tuning, which neither expands the knowledge boundary nor enforces evidence-grounded…

Computation and Language · Computer Science 2025-10-13 Deshui Yu , Yizhi Wang , Saihui Jin , Taojie Zhu , Fanyi Zeng , Wen Qian , Zirui Huang , Jingli Ouyang , Jiameng Li , Zhen Song , Tian Guan , Yonghong He

Graph-based retrieval-augmented generation (Graph-based RAG) has demonstrated significant potential in enhancing Large Language Models (LLMs) with structured knowledge. However, existing methods face three critical challenges: Inaccurate…

Machine Learning · Computer Science 2026-03-18 Yubo Wang , Haoyang Li , Fei Teng , Lei Chen

In this paper, we present a novel diagnostic framework that integrates Knowledge Graphs (KGs) and Large Language Models (LLMs) to support system diagnostics in high-reliability systems such as nuclear power plants. Traditional diagnostic…

Artificial Intelligence · Computer Science 2025-09-01 Saman Marandi , Yu-Shu Hu , Mohammad Modarres

Explainable recommender systems are designed to elucidate the explanation behind each recommendation, enabling users to comprehend the underlying logic. Previous works perform rating prediction and explanation generation in a multi-task…

Information Retrieval · Computer Science 2025-04-09 Shijie Liu , Ruixing Ding , Weihai Lu , Jun Wang , Mo Yu , Xiaoming Shi , Wei Zhang

We introduce context augmentation, a data-augmentation approach that uses large language models (LLMs) to generate contexts around observed strings as a means of facilitating valid frequentist inference. These generated contexts serve to…

Methodology · Statistics 2025-07-01 Marc Ratkovic

Citation text plays a pivotal role in elucidating the connection between scientific documents, demanding an in-depth comprehension of the cited paper. Constructing citations is often time-consuming, requiring researchers to delve into…

Computation and Language · Computer Science 2024-04-23 Avinash Anand , Kritarth Prasad , Ujjwal Goel , Mohit Gupta , Naman Lal , Astha Verma , Rajiv Ratn Shah

Recent lay language generation systems have used Transformer models trained on a parallel corpus to increase health information accessibility. However, the applicability of these models is constrained by the limited size and topical breadth…

Computation and Language · Computer Science 2024-01-26 Yue Guo , Wei Qiu , Gondy Leroy , Sheng Wang , Trevor Cohen

The growing use of large language models (LLMs) for biomedical question answering raises concerns about the accuracy and evidentiary support of their responses. To address this, we present Answered with Evidence, a framework for evaluating…

Machine Learning · Computer Science 2025-07-08 Julian D Baldwin , Christina Dinh , Arjun Mukerji , Neil Sanghavi , Saurabh Gombar

The use of knowledge graphs in recommender systems has become one of the common approaches to addressing data sparsity and cold start problems. Recent advances in large language models (LLMs) offer new possibilities for processing side and…

Information Retrieval · Computer Science 2025-02-13 Minhye Jeon , Seokho Ahn , Young-Duk Seo

Large language models (LLMs), including zero-shot and few-shot paradigms, have shown promising capabilities in clinical text generation. However, real-world applications face two key challenges: (1) patient data is highly unstructured,…

Computation and Language · Computer Science 2025-07-10 Garapati Keerthana , Manik Gupta

Retrieving information from EHR systems is essential for answering specific questions about patient journeys and improving the delivery of clinical care. Despite this fact, most EHR systems still rely on keyword-based searches. With the…

Computation and Language · Computer Science 2024-04-11 Shashi Kant Gupta , Aditya Basu , Bradley Taylor , Anai Kothari , Hrituraj Singh

The field of hypothesis generation promises to reduce costs in neuroscience by narrowing the range of interventional studies needed to study various phenomena. Existing machine learning methods can generate scientific hypotheses from…

Machine Learning · Computer Science 2025-07-04 Zachary C. Brown , David Carlson

Causality is essential for understanding complex systems, such as the economy, the brain, and the climate. Constructing causal graphs often relies on either data-driven or expert-driven approaches, both fraught with challenges. The former…

Artificial Intelligence · Computer Science 2024-06-12 Kai-Hendrik Cohrs , Gherardo Varando , Emiliano Diaz , Vasileios Sitokonstantinou , Gustau Camps-Valls

The paper introduces a framework for the evaluation of the encoding of factual scientific knowledge, designed to streamline the manual evaluation process typically conducted by domain experts. Inferring over and extracting information from…

Computation and Language · Computer Science 2024-10-21 Magdalena Wysocka , Oskar Wysocki , Maxime Delmas , Vincent Mutel , Andre Freitas

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Large Language Models (LLMs) have shown promise in character imitation, enabling immersive and engaging conversations. However, they often generate content that is irrelevant or inconsistent with a character's background. We attribute these…

Artificial Intelligence · Computer Science 2025-05-27 Yongjie Wang , Jonathan Leung , Zhiqi Shen

Abductive reasoning is the process of making educated guesses to provide explanations for observations. Although many applications require the use of knowledge for explanations, the utilization of abductive reasoning in conjunction with…

Artificial Intelligence · Computer Science 2024-06-21 Jiaxin Bai , Yicheng Wang , Tianshi Zheng , Yue Guo , Xin Liu , Yangqiu Song

Large Language Models (LLMs) demonstrate strong reasoning abilities but face limitations such as hallucinations and outdated knowledge. Knowledge Graph (KG)-based Retrieval-Augmented Generation (RAG) addresses these issues by grounding LLM…

Computation and Language · Computer Science 2025-03-04 Mufei Li , Siqi Miao , Pan Li

Graph-based retrieval-augmented generation (GraphRAG) exploits structured knowledge to support knowledge-intensive reasoning. However, most existing methods treat graphs as intermediate artifacts, and the few subgraph-based retrieval…

Information Retrieval · Computer Science 2026-03-10 Haonan Yuan , Qingyun Sun , Junhua Shi , Mingjun Liu , Jiaqi Yuan , Ziwei Zhang , Xingcheng Fu , Jianxin Li

ChatGPT, as a recently launched large language model (LLM), has shown superior performance in various natural language processing (NLP) tasks. However, two major limitations hinder its potential applications: (1) the inflexibility of…

Computation and Language · Computer Science 2023-09-20 Yucheng Shi , Hehuan Ma , Wenliang Zhong , Qiaoyu Tan , Gengchen Mai , Xiang Li , Tianming Liu , Junzhou Huang
‹ Prev 1 8 9 10 Next ›