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Recent advances in deep research systems enable large language models to retrieve, synthesize, and reason over large-scale external knowledge. In medicine, developing clinical guidelines critically depends on such deep evidence integration.…

The coexistence of multiple defect categories as well as the substantial class imbalance problem significantly impair the detection of sewer pipeline defects. To solve this problem, a multi-label pipe defect recognition method is proposed…

Computer Vision and Pattern Recognition · Computer Science 2024-08-02 Xin Zuo , Yu Sheng , Jifeng Shen , Yongwei Shan

Image edge detection (ED) requires specialized architectures, reliable supervision, and rigorous evaluation criteria to ensure accurate localization. In this work, we present a framework for high-precision ED that jointly addresses…

Computer Vision and Pattern Recognition · Computer Science 2026-02-09 Hao Shu

With the increasing attention to molecular machine learning, various innovations have been made in designing better models or proposing more comprehensive benchmarks. However, less is studied on the data preprocessing schedule for molecular…

Machine Learning · Computer Science 2024-07-30 Yuchen Shen , Barnabás Póczos

Leveraging Multi-modal Large Language Models (MLLMs) to accelerate frontier scientific research is promising, yet how to rigorously evaluate such systems remains unclear. Existing benchmarks mainly focus on single-document understanding,…

Artificial Intelligence · Computer Science 2026-04-14 Lei Xiong , Huaying Yuan , Zheng Liu , Zhao Cao , Zhicheng Dou

Taste peptides have emerged as promising natural flavoring agents attributed to their unique organoleptic properties, high safety profile, and potential health benefits. However, the de novo identification of taste peptides derived from…

Benchmark datasets for digital dermatology unwittingly contain inaccuracies that reduce trust in model performance estimates. We propose a resource-efficient data-cleaning protocol to identify issues that escaped previous curation. The…

Adversarial detection aims to determine whether a given sample is an adversarial one based on the discrepancy between natural and adversarial distributions. Unfortunately, estimating or comparing two data distributions is extremely…

Machine Learning · Computer Science 2023-05-26 Shuhai Zhang , Feng Liu , Jiahao Yang , Yifan Yang , Changsheng Li , Bo Han , Mingkui Tan

Functional peptides have the potential to treat a variety of diseases. Their good therapeutic efficacy and low toxicity make them ideal therapeutic agents. Artificial intelligence-based computational strategies can help quickly identify new…

Quantitative Methods · Quantitative Biology 2023-09-27 Zebin Ma , Yonglin Zou , Xiaobin Huang , Wenjin Yan , Hao Xu , Jiexin Yang , Ying Zhang , Jinqi Huang

Synthesizing information from multiple data sources plays a crucial role in the practice of modern medicine. Current applications of artificial intelligence in medicine often focus on single-modality data due to a lack of publicly…

Graph-based learning is a cornerstone for analyzing structured data, with node classification as a central task. However, in many real-world graphs, nodes lack informative feature vectors, leaving only neighborhood connectivity and class…

Machine Learning · Computer Science 2025-10-14 Sujan Chakraborty , Rahul Bordoloi , Anindya Sengupta , Olaf Wolkenhauer , Saptarshi Bej

Embedding benchmarks like MTEB report a single score per model, implicitly treating robustness as a static, scalar property. We argue that embedding robustness is multidimensional, since models respond differently to different types of…

Computation and Language · Computer Science 2026-05-28 Manuel Frank , Haithem Afli

Mass spectrometry provides a high-throughput approach to identify proteins in biological samples. A key step in the analysis of mass spectrometry data is to identify the peptide sequence that, most probably, gave rise to each observed…

Applications · Statistics 2013-01-14 Qunhua Li , Jimmy K. Eng , Matthew Stephens

The goal in semi-supervised learning is to effectively combine labeled and unlabeled data. One way to do this is by encouraging smoothness across edges in a graph whose nodes correspond to input examples. In many graph-based methods, labels…

Machine Learning · Computer Science 2018-02-28 Nir Rosenfeld , Amir Globerson

Over the last few years, there has been a rapid growth towards demonstrating highly sensitive, fast photodetectors using photoactive nano-materials. As with any other developing and highly inter-disciplinary field, the existing reports…

Mesoscale and Nanoscale Physics · Physics 2020-05-19 Nithin Abraham , Kausik Majumdar

Unsupervised anomaly detection (AD) methods typically assume clean training data, yet real-world datasets often contain undetected or mislabeled anomalies, leading to significant performance degradation. Existing solutions require access to…

Machine Learning · Computer Science 2026-01-30 Sukanya Patra , Souhaib Ben Taieb

Background: In this paper we present the approaches and methods employed in order to deal with a large scale multi-label semantic indexing task of biomedical papers. This work was mainly implemented within the context of the BioASQ…

We introduce a protein language model for determining the complete sequence of a peptide based on measurement of a limited set of amino acids. To date, protein sequencing relies on mass spectrometry, with some novel edman degregation based…

Consumption of antimicrobial drugs, such as antibiotics, is linked with antimicrobial resistance. Surveillance of antimicrobial drug consumption is therefore an important element in dealing with antimicrobial resistance. Many countries lack…

Information Retrieval · Computer Science 2018-03-12 Niels Dalum Hansen , Kåre Mølbak , Ingemar Cox , Christina Lioma

Risk assessment tools in healthcare commonly employ point-based scoring systems that map patients to ordinal risk categories via thresholds. While electronic health record (EHR) data presents opportunities for data-driven optimization of…

Machine Learning · Computer Science 2026-04-20 Fardin Ganjkhanloo , Emmett Springer , Erik H. Hoyer , Daniel L. Young , Kimia Ghobadi