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Purpose: Bone metastasis have a major impact on the quality of life of patients and they are diverse in terms of size and location, making their segmentation complex. Manual segmentation is time-consuming, and expert segmentations are…

Image and Video Processing · Electrical Eng. & Systems 2024-09-18 Emile Saillard , Aurélie Levillain , David Mitton , Jean-Baptiste Pialat , Cyrille Confavreux , Hélène Follet , Thomas Grenier

Data cleaning consumes about 80% of the time spent on data analysis for clinical research projects. This is a much bigger problem in the era of big data and machine learning in the field of medicine where large volumes of data are being…

Medical Physics · Physics 2018-01-03 Timothy Rozario , Troy Long , Mingli Chen , Weiguo Lu , Steve Jiang

Microorganisms play a vital role in human life. Therefore, microorganism detection is of great significance to human beings. However, the traditional manual microscopic detection methods have the disadvantages of long detection cycle, low…

Computer Vision and Pattern Recognition · Computer Science 2022-04-12 Pingli Ma , Chen Li , Md Mamunur Rahaman , Yudong Yao , Jiawei Zhang , Shuojia Zou , Xin Zhao , Marcin Grzegorzek

As herbarium specimens are increasingly becoming digitized and accessible in online repositories, advanced computer vision techniques are being used to extract information from them. The presence of certain plant organs on herbarium sheets…

Computer Vision and Pattern Recognition · Computer Science 2020-08-03 Sohaib Younis , Marco Schmidt , Claus Weiland , Stefan Dressler , Bernhard Seeger , Thomas Hickler

Stem cell-derived organoids are a promising tool to model native human tissues as they resemble human organs functionally and structurally compared to traditional monolayer cell-based assays. For instance, colon organoids can spontaneously…

Quantitative Methods · Quantitative Biology 2022-10-14 Lyan Abdul , Jocelyn Xu , Alexander Sotra , Abbas Chaudary , Jerry Gao , Shravanthi Rajasekar , Nicky Anvari , Hamidreza Mahyar , Boyang Zhang

Recent advances in brain organoid technology are exciting new ways, which have the potential to change the way how doctors and researchers understand and treat cerebral diseases. Despite the remarkable use of brain organoids derived from…

Image and Video Processing · Electrical Eng. & Systems 2022-11-03 Jingli Shi

How cells regulate the number of organelles is a fundamental question in cell biology. While decades of experimental work have uncovered four fundamental processes that regulate organelle biogenesis, namely, de novo synthesis, fission,…

Subcellular Processes · Quantitative Biology 2019-09-04 Sandeep Choubey , Dipjyoti Das , Saptarshi Majumdar

This research presents an advanced AI-powered ultrasound imaging system that incorporates real-time image processing, organ tracking, and voice commands to enhance the efficiency and accuracy of diagnoses in clinical practice. Traditional…

Image and Video Processing · Electrical Eng. & Systems 2024-11-21 Emad Mohamed , Shruti Tiwari , Sheena Christabel Pravin

Diagnostic imaging plays a critical role in healthcare, serving as a fundamental asset for timely diagnosis, disease staging and management as well as for treatment choice, planning, guidance, and follow-up. Among the diagnostic imaging…

Signal Processing · Electrical Eng. & Systems 2021-09-24 Ruud JG van Sloun , Jong Chul Ye , Yonina C Eldar

Recent technological advancements in data acquisition tools allowed life scientists to acquire multimodal data from different biological application domains. Broadly categorized in three types (i.e., sequences, images, and signals), these…

Quantitative Methods · Quantitative Biology 2020-03-03 Mufti Mahmud , M Shamim Kaiser , Amir Hussain

Tools, models and statistical methods for signal processing and medical image analysis and training deep learning models to create research prototypes for eventual clinical applications are of special interest to the biomedical imaging…

Image and Video Processing · Electrical Eng. & Systems 2023-12-22 Pratik Shah , Jenna Lester , Jana G Deflino , Vinay Pai

Accurate segmentation of multiple organs of the head, neck, chest, and abdomen from medical images is an essential step in computer-aided diagnosis, surgical navigation, and radiation therapy. In the past few years, with a data-driven…

Image and Video Processing · Electrical Eng. & Systems 2023-03-03 Xiaoyu Liu , Linhao Qu , Ziyue Xie , Jiayue Zhao , Yonghong Shi , Zhijian Song

In many real-world scientific problems, generating ground truth (GT) for supervised learning is almost impossible. The causes include limitations imposed by scientific instrument, physical phenomenon itself, or the complexity of modeling.…

Image and Video Processing · Electrical Eng. & Systems 2020-08-31 Arif Ahmed Sekh , Ida S. Opstad , Rohit Agarwal , Asa Birna Birgisdottir , Truls Myrmel , Balpreet Singh Ahluwalia , Krishna Agarwal , Dilip K. Prasad

Understanding sickle cell dynamics requires accurate identification of morphological transitions under diverse biophysical conditions, particularly in densely packed and overlapping cell populations. Here, we present an automated deep…

Computer Vision and Pattern Recognition · Computer Science 2026-02-06 Nikhil Kadivar , Guansheng Li , Jianlu Zheng , Ming Dao , George Em Karniadakis , Mengjia Xu

Autonomous surgical procedures, in particular minimal invasive surgeries, are the next frontier for Artificial Intelligence research. However, the existing challenges include precise identification of the human anatomy and the surgical…

Computer Vision and Pattern Recognition · Computer Science 2020-12-15 Salman Maqbool , Aqsa Riaz , Hasan Sajid , Osman Hasan

Accurately measuring the size, morphology, and structure of nanoparticles is very important, because they are strongly dependent on their properties for many applications. In this paper, we present a deep-learning based method for…

Materials Science · Physics 2022-07-29 Claudius Zelenka , Marius Kamp , Kolja Strohm , Akram Kadoura , Jacob Johny , Reinhard Koch , Lorenz Kienle

The organization of cells within tissues plays a vital role in various biological processes, including development and morphogenesis. As a result, understanding how cells self-organize in tissues has been an active area of research. In our…

Soft Condensed Matter · Physics 2023-10-09 Kanaya Malakar , Rafael I. Rubenstein , Dapeng Bi , Bulbul Chakraborty

Intracellular transport of organelles is fundamental to cell function and health. The mounting evidence suggests that this transport is in fact anomalous. However, the reasons for the anomaly is still under debate. We examined experimental…

Subcellular Processes · Quantitative Biology 2018-12-10 Nickolay Korabel , Thomas A. Waigh , Sergei Fedotov , Viki J. Allan

Endometriosis is a non-malignant disorder that affects 176 million women globally. Diagnostic delays result in severe dysmenorrhea, dyspareunia, chronic pelvic pain, and infertility. Therefore, there is a significant need to diagnose…

Image and Video Processing · Electrical Eng. & Systems 2023-02-21 Adrian Balica , Jennifer Dai , Kayla Piiwaa , Xiao Qi , Ashlee N. Green , Nancy Phillips , Susan Egan , Ilker Hacihaliloglu

Cells are the fundamental unit of biological organization, and identifying them in imaging data - cell segmentation - is a critical task for various cellular imaging experiments. While deep learning methods have led to substantial progress…