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The false discovery rate (FDR) and the false non-discovery rate (FNR), defined as the expected false discovery proportion (FDP) and the false non-discovery proportion (FNP), are the most popular benchmarks for multiple testing. Despite the…

Statistics Theory · Mathematics 2025-09-03 Yutong Nie , Yihong Wu

Motivation: In microarray analysis, special consideration must be given to the issues of multiple statistical tests and typically p-values are adjusted to control family-wise error rate (FWER) or false discovery rate (FDR). FDR metrics have…

Quantitative Methods · Quantitative Biology 2007-05-23 Rishi L. Khan , Rajanikanth Vadigepalli , Guang Gao , James S. Schwaber

Graph Neural Networks (GNNs) have become the de facto standard for analyzing graph-structured data, leveraging message-passing techniques to capture both structural and node feature information. However, recent studies have raised concerns…

Machine Learning · Computer Science 2024-10-22 Yujia Wu , Bo Yang , Yang Zhao , Elynn Chen , Yuzhou Chen , Zheshi Zheng

Graph attention networks (GATs) are widely used and often appear robust to noise in node covariates and edges, yet rigorous statistical guarantees demonstrating a provable advantage of GATs over non-attention graph neural networks~(GNNs)…

Machine Learning · Statistics 2026-02-02 Somak Laha , Suqi Liu , Morgane Austern

Multiple hypothesis testing is a fundamental problem in high dimensional inference, with wide applications in many scientific fields. In genome-wide association studies, tens of thousands of tests are performed simultaneously to find if any…

Methodology · Statistics 2011-11-16 Jianqing Fan , Xu Han , Weijie Gu

Large-scale hypothesis testing is central to modern science, where controlling the False Discovery Rate (FDR) has become the standard approach to managing false positives across many simultaneous tests. Hypotheses rarely exist in isolation;…

Methodology · Statistics 2026-05-19 Binyamin Perets , Shie Mannor

Graph Neural Networks (GNNs) excel in diverse tasks, yet their applications in high-stakes domains are often hampered by unreliable predictions. Although numerous uncertainty quantification methods have been proposed to address this…

Machine Learning · Computer Science 2024-07-22 Tianyi Zhao , Jian Kang , Lu Cheng

Graph Anomaly Detection (GAD) is critical in security-sensitive domains, yet faces reliability challenges: miscalibrated confidence estimation (underconfidence in normal nodes, overconfidence in anomalies), adversarial vulnerability of…

Machine Learning · Computer Science 2025-04-04 Songran Bai , Xiaolong Zheng , Daniel Dajun Zeng

The field of hypothesis generation promises to reduce costs in neuroscience by narrowing the range of interventional studies needed to study various phenomena. Existing machine learning methods can generate scientific hypotheses from…

Machine Learning · Computer Science 2025-07-04 Zachary C. Brown , David Carlson

We study the distribution of diameters d of Erd\"os-R\'enyi random graphs with average connectivity c. The diameter d is the maximum among all shortest distances between pairs of nodes in a graph and an important quantity for all dynamic…

Disordered Systems and Neural Networks · Physics 2018-03-28 Alexander K. Hartmann , Marc Mézard

We study the distribution of a fully connected neural network with random Gaussian weights and biases in which the hidden layer widths are proportional to a large constant $n$. Under mild assumptions on the non-linearity, we obtain…

Machine Learning · Computer Science 2024-06-18 Stefano Favaro , Boris Hanin , Domenico Marinucci , Ivan Nourdin , Giovanni Peccati

Let $r \ge 2$ be a fixed constant and let $ {\mathcal H}$ be an $r$-uniform, $D$-regular hypergraph on $N$ vertices. Assume further that $ D \to \infty$ as $N \to \infty$ and that degrees of pairs of vertices in ${\mathcal H}$ are at most…

Combinatorics · Mathematics 2019-10-09 Patrick Bennett , Tom Bohman

The PC algorithm allows investigators to estimate a complete partially directed acyclic graph (CPDAG) from a finite dataset, but few groups have investigated strategies for estimating and controlling the false discovery rate (FDR) of the…

Machine Learning · Statistics 2017-05-11 Eric V. Strobl , Peter L. Spirtes , Shyam Visweswaran

This paper presents a fast, principled approach for detecting anomalous and out-of-distribution (OOD) samples in deep neural networks (DNN). We propose the application of linear statistical dimensionality reduction techniques on the…

Machine Learning · Computer Science 2022-03-22 Ibrahima J. Ndiour , Nilesh A. Ahuja , Omesh Tickoo

The development and evaluation of graph neural networks (GNNs) generally follow the independent and identically distributed (i.i.d.) assumption. Yet this assumption is often untenable in practice due to the uncontrollable data generation…

Machine Learning · Computer Science 2025-03-06 Yiming Xu , Bin Shi , Zhen Peng , Huixiang Liu , Bo Dong , Chen Chen

For a $\Delta$-regular connected graph ${\sf H}$ the problem of determining the upper tail large deviation for the number of copies of ${\sf H}$ in $\mathbb{G}(n,p)$, an Erd\H{o}s-R\'{e}nyi graph on $n$ vertices with edge probability $p$,…

Probability · Mathematics 2020-04-08 Anirban Basak , Riddhipratim Basu

We derive an (almost) guaranteed upper bound on the error of deep neural networks under distribution shift using unlabeled test data. Prior methods either give bounds that are vacuous in practice or give estimates that are accurate on…

Machine Learning · Statistics 2023-06-02 Elan Rosenfeld , Saurabh Garg

Binary classification problems can be naturally modeled as bipartite graphs, where we attempt to classify right nodes based on their left adjacencies. We consider the case of labeled bipartite graphs in which some labels and edges are not…

Combinatorics · Mathematics 2018-11-13 R. W. R. Darling , Mark L. Velednitsky

We propose a novel methodology for discovering the presence of relationships realized as binary time series between variables in high dimension. To make it visually intuitive, we regard the existence of a relationship as an edge connection,…

Methodology · Statistics 2024-10-07 Masaki Toyoda , Yoshimasa Uematsu

In the sufficiently sparse case, we find the probability that a uniformly random bipartite graph with given degree sequence contains no edge from a specified set of edges. This enables us to enumerate loop-free digraphs and oriented graphs…

Combinatorics · Mathematics 2026-01-09 Catherine Greenhill , Mahdieh Hasheminezhad , Isaiah Iliffe , Brendan D. McKay