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Machine learning (ML) has recently shown promising results in medical predictions using electronic health records (EHRs). However, since ML models typically have a limited capability in terms of input sizes, selecting specific medical…

Machine Learning · Computer Science 2024-07-23 Junu Kim , Chaeeun Shim , Bosco Seong Kyu Yang , Chami Im , Sung Yoon Lim , Han-Gil Jeong , Edward Choi

Electronic medical records (EMR) contain comprehensive patient information and are typically stored in a relational database with multiple tables. Effective and efficient patient information retrieval from EMR data is a challenging task for…

Computation and Language · Computer Science 2020-01-31 Ping Wang , Tian Shi , Chandan K. Reddy

The presence of detailed clinical information in electronic health record (EHR) systems presents promising prospects for enhancing patient care through automated retrieval techniques. Nevertheless, it is widely acknowledged that accessing…

Information Retrieval · Computer Science 2024-09-13 Abderrahim Oussama Batouche , Eugen Czeizler , Miika Koskinen , Tuomas Mirtti , Antti Sakari Rannikko

Objective: Medical relations are the core components of medical knowledge graphs that are needed for healthcare artificial intelligence. However, the requirement of expert annotation by conventional algorithm development processes creates a…

Machine Learning · Computer Science 2020-09-09 Yucong Lin , Keming Lu , Yulin Chen , Chuan Hong , Sheng Yu

Electronic Health Records (EHR) contain valuable clinical information for predicting patient outcomes and guiding healthcare decisions. However, effectively modeling Electronic Health Records (EHRs) requires addressing data heterogeneity…

Machine Learning · Computer Science 2025-07-22 Junhan Yu , Zhunyi Feng , Junwei Lu , Tianxi Cai , Doudou Zhou

Electronic Patient Record (EPR) systems contain valuable clinical information, but much of it is trapped in unstructured text, limiting its use for research and decision-making. Large language models can extract such information but require…

Large language models (LLMs) hold promise for transforming healthcare, from streamlining administrative and clinical workflows to enriching patient engagement and advancing clinical decision-making. However, their successful integration…

Computers and Society · Computer Science 2025-04-04 Mohammed Al-Garadi , Tushar Mungle , Abdulaziz Ahmed , Abeed Sarker , Zhuqi Miao , Michael E. Matheny

Error detection (ED) in tabular data is crucial yet challenging due to diverse error types and the need for contextual understanding. Traditional ED methods often rely heavily on manual criteria and labels, making them labor-intensive.…

Machine Learning · Computer Science 2025-04-09 Wei Ni , Kaihang Zhang , Xiaoye Miao , Xiangyu Zhao , Yangyang Wu , Yaoshu Wang , Jianwei Yin

Large language models (LLMs) are increasingly used to extract structured information from free-text clinical records, but prior work often focuses on single tasks, limited models, and English-language reports. We evaluated 15 open-weight…

Electronic health records (EHRs) contain richly structured, longitudinal data essential for predictive modeling, yet stringent privacy regulations (e.g., HIPAA, GDPR) often restrict access to individual-level records. We introduce…

Accessing longitudinal multimodal Electronic Healthcare Records (EHRs) is challenging due to privacy concerns, which hinders the use of ML for healthcare applications. Synthetic EHRs generation bypasses the need to share sensitive real…

Computation and Language · Computer Science 2022-11-04 Zifeng Wang , Jimeng Sun

Converting natural language questions into SQL queries enables non-expert users to interact with relational databases and has long been a central task for natural language interfaces to data. While the WikiSQL dataset played a key role in…

Computation and Language · Computer Science 2025-12-10 Dzmitry Pihulski , Karol Charchut , Viktoria Novogrodskaia , Jan Kocoń

Text-to-SQL bridges the gap between natural language and structured database language, thus allowing non-technical users to easily query databases. Traditional approaches model text-to-SQL as a direct translation task, where a given Natural…

Machine Learning · Computer Science 2025-08-12 Anurag Tripathi , Vaibhav Patle , Abhinav Jain , Ayush Pundir , Sairam Menon , Ajeet Kumar Singh , Dorien Herremans

Recent breakthroughs in large language models (LLMs) offer unprecedented natural language understanding and generation capabilities. However, existing surveys on LLMs in biomedicine often focus on specific applications or model…

The integration of Large Language Models (LLMs) into data analytics has unlocked powerful capabilities for reasoning over bulk structured and unstructured data. However, existing systems typically rely on either DataFrame primitives, which…

Databases · Computer Science 2026-03-13 Kangkang Qi , Dongyang Xie , Wenbo Li , Hao Zhang , Yuanyuan Zhu , Jeffrey Xu Yu , Kangfei Zhao

Objective: Narrative text in Electronic health records (EHR) contain rich information for medical and data science studies. This paper introduces the design and performance of Narrative Information Linear Extraction (NILE), a natural…

Computation and Language · Computer Science 2019-07-17 Sheng Yu , Tianrun Cai , Tianxi Cai

Clinical decision support systems require models that are not only highly accurate but also equitable and sensitive to the implications of missed diagnoses. In this study, we introduce a knowledge-guided in-context learning (ICL) framework…

Machine Learning · Computer Science 2025-07-28 Fatemeh Nazary , Yashar Deldjoo , Tommaso Di Noia , Eugenio di Sciascio

Deploying large language models (LLMs) for structured data extraction in domains such as financial compliance reporting, legal document analytics, and multilingual knowledge base construction is often impractical for smaller teams due to…

Computation and Language · Computer Science 2025-09-11 Yu Cheng Chih , Yong Hao Hou

Large Language Models (LLMs) are increasingly adopted in healthcare to support clinical decision-making, summarize electronic health records (EHRs), and enhance patient care. However, this integration introduces significant privacy and…

Cryptography and Security · Computer Science 2026-01-16 Mohoshin Ara Tahera , Karamveer Singh Sidhu , Shuvalaxmi Dass , Sajal Saha

The global shortage of healthcare workers has demanded the development of smart healthcare assistants, which can help monitor and alert healthcare workers when necessary. We examine the healthcare knowledge of existing Large Vision Language…

Computation and Language · Computer Science 2024-10-10 Sourjyadip Ray , Kushal Gupta , Soumi Kundu , Payal Arvind Kasat , Somak Aditya , Pawan Goyal
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