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Prediction and discovery of new materials with desired properties are at the forefront of quantum science and technology research. A major bottleneck in this field is the computational resources and time complexity related to finding new…

Methods of topological data analysis have been successfully applied in a wide range of fields to provide useful summaries of the structure of complex data sets in terms of topological descriptors, such as persistence diagrams. While there…

Algebraic Topology · Mathematics 2020-12-08 Lida Kanari , Adélie Garin , Kathryn Hess

The relationship between the macroscopic response of the slope and the macrostructure of the force chain network under the action of the metal plate was studied by the particle discrete element method and the persistent homology. The…

Soft Condensed Matter · Physics 2020-10-20 Shengdong Zhang , Shihui You , Longfei Chen , Xiaofei Liu

Unravelling the block structure of a network is critical for studying macroscopic features and community-level dynamics. The weighted stochastic block model (WSBM), a variation of the traditional stochastic block model, is designed for…

Dynamical Systems · Mathematics 2021-08-04 Wooseok Jung

Nervous systems are characterized by neurons displaying a diversity of morphological shapes. Traditionally, different shapes have been qualitatively described based on visual inspection and quantitatively described based on morphometric…

Neurons and Cognition · Quantitative Biology 2016-03-29 Lida Kanari , Paweł Dłotko , Martina Scolamiero , Ran Levi , Julian Shillcock , Kathryn Hess , Henry Markram

This paper presents a novel topology-aware dimensionality reduction approach aiming at accurately visualizing the cyclic patterns present in high dimensional data. To that end, we build on the Topological Autoencoders (TopoAE) formulation.…

Computational Geometry · Computer Science 2025-10-06 Mattéo Clémot , Julie Digne , Julien Tierny

In machine-learning-assisted high-throughput defect studies, a defect-aware latent representation of the supercell structure is crucial to the accurate prediction of defect properties. The performance of current graph neural network (GNN)…

Materials Science · Physics 2024-11-01 Zhenyao Fang , Qimin Yan

We start to study the problem of classifying smooth proper varieties over a field k from the standpoint of A^1-homotopy theory. Motivated by the topological theory of surgery, we discuss the problem of classifying up to isomorphism all…

Algebraic Geometry · Mathematics 2011-04-15 Aravind Asok , Fabien Morel

Persistent homology is a method from computational algebraic topology that can be used to study the "shape" of data. We illustrate two filtrations --- the weight rank clique filtration and the Vietoris--Rips (VR) filtration --- that are…

Computational Geometry · Computer Science 2016-10-30 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

While the majority of approaches to the characterization of complex networks has relied on measurements considering only the immediate neighborhood of each network node, valuable information about the network topological properties can be…

Statistical Mechanics · Physics 2015-06-24 Luciano da Fontoura Costa , Filipi Nascimento Silva

Convolutional neural networks (CNNs) are a standard tool for computer vision tasks such as image classification. However, typical model architectures may result in the loss of topological information. In specific domains such as…

Image and Video Processing · Electrical Eng. & Systems 2026-03-05 Shrunal Pothagoni , Benjamin Schweinhart

We study homomorphism polynomials, which are polynomials that enumerate all homomorphisms from a pattern graph $H$ to $n$-vertex graphs. These polynomials have received a lot of attention recently for their crucial role in several new…

Computational Complexity · Computer Science 2020-11-17 Balagopal Komarath , Anurag Pandey , C. S. Rahul

Persistent homology (PH) is a recently developed theory in the field of algebraic topology to study shapes of datasets. It is an effective data analysis tool that is robust to noise and has been widely applied. We demonstrate a general…

Signal Processing · Electrical Eng. & Systems 2020-05-05 Yu-Min Chung , Chuan-Shen Hu , Yu-Lun Lo , Hau-Tieng Wu

Persistent homology is a common technique in topological data analysis providing geometrical and topological information about the sample space. All this information, known as topological features, is summarized in persistence diagrams, and…

Methodology · Statistics 2022-04-05 Asael Fabian Martínez

We present a parallelizable algorithm for computing the persistent homology of a filtered chain complex. Our approach differs from the commonly used reduction algorithm by first computing persistence pairs within local chunks, then…

Algebraic Topology · Mathematics 2013-03-05 Ulrich Bauer , Michael Kerber , Jan Reininghaus

In this paper, we describe an algorithm that, for a smooth connected curve $X$ over a field $k$ with normal completion having arithmetic genus $p_a(X)$, a finite locally constant sheaf $\mathcal A$ on $X_{et}$ of abelian groups of torsion…

Algebraic Geometry · Mathematics 2017-11-20 Jinbi Jin

The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…

Quantitative Methods · Quantitative Biology 2018-06-14 Ann E. Sizemore , Jennifer Phillips-Cremins , Robert Ghrist , Danielle S. Bassett

We investigate the persistence and regularity of spectral submanifolds (SSMs) in high-dimensional parametric dynamical systems undergoing a Hopf bifurcation. By analyzing how resonances in the linearized spectrum near bifurcation points…

Dynamical Systems · Mathematics 2026-03-24 James King , Bálint Kaszás , Gergely Buza , William Jussiau , George Haller

We propose an approach to learning with graph-structured data in the problem domain of graph classification. In particular, we present a novel type of readout operation to aggregate node features into a graph-level representation. To this…

Machine Learning · Computer Science 2021-05-18 Christoph D. Hofer , Florian Graf , Bastian Rieck , Marc Niethammer , Roland Kwitt

This article aims to study the topological invariant properties encoded in node graph representational embeddings by utilizing tools available in persistent homology. Specifically, given a node embedding representation algorithm, we…

Machine Learning · Computer Science 2021-10-12 Mustafa Hajij , Ghada Zamzmi , Xuanting Cai