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Given a filtration of simplicial complexes, one usually applies persistent homology and summarizes the results in barcodes. Then, in order to extract statistical information from these barcodes, one needs to compute statistical indicators…

Algebraic Topology · Mathematics 2024-10-08 Alessandro Bravetti , Martín Mijangos , Pablo Padilla

Persistent homology is one of the most popular methods in topological data analysis. An initial step in its use involves constructing a nested sequence of simplicial complexes. There is an abundance of different complexes to choose from,…

Algebraic Topology · Mathematics 2026-01-16 Niklas Canova , Sara Kališnik , Aaron Moser , Bastian Rieck , Ana Žegarac

Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs). PDs exhibit, however, complex structure and are difficult to integrate in today's machine…

Machine Learning · Statistics 2019-06-11 Bartosz Zieliński , Michał Lipiński , Mateusz Juda , Matthias Zeppelzauer , Paweł Dłotko

Trophic coherence, a measure of a graph's hierarchical organisation, has been shown to be linked to a graph's structural and dynamical aspects such as cyclicity, stability and normality. Trophic levels of vertices can reveal their…

Physics and Society · Physics 2020-10-08 Giannis Moutsinas , Choudhry Shuaib , Weisi Guo , Stephen Jarvis

Persistent Homology is a widely used topological data analysis tool that creates a concise description of the topological properties of a point cloud based on a specified filtration. Most filtrations used for persistent homology depend…

Algebraic Topology · Mathematics 2024-06-05 Vincent P. Grande , Michael T. Schaub

Persistence diagrams, which summarize the birth and death of homological features extracted from data, are employed as stable signatures for applications in image analysis and other areas. Besides simply considering the multiset of…

Computational Geometry · Computer Science 2018-10-16 Tamal K. Dey , Tao Hou , Sayan Mandal

Biomolecular structure comparison not only reveals evolutionary relationships, but also sheds light on biological functional properties. However, traditional definitions of structure or sequence similarity always involve superposition or…

Quantitative Methods · Quantitative Biology 2017-07-13 Kelin Xia

This paper extends graphic statics by describing the forces and moments in any 3D rigid-jointed frame structure in terms of cell complexes using homology theory of algebraic topology. Graphic statics provides a highly geometric way to…

Metric Geometry · Mathematics 2026-03-13 Allan McRobie

We study the inverse problem for persistent homology: For a fixed simplicial complex $K$, we analyse the fiber of the continuous map $\mathrm{PH}$ on the space of filters that assigns to a filter $f: K \to \mathbb R$ the total barcode of…

Algebraic Topology · Mathematics 2022-04-12 Jacob Leygonie , Ulrike Tillmann

Persistent homology (PH) is a relatively new field in applied mathematics that studies the components and shapes of discrete data. In this work, we demonstrate that PH can be used as a universal framework to identify phases in spin models,…

Statistical Mechanics · Physics 2020-12-11 Bart Olsthoorn , Johan Hellsvik , Alexander V. Balatsky

Quantifying patterns in visual or tactile textures provides important information about the process or phenomena that generated these patterns. In manufacturing, these patterns can be intentionally introduced as a design feature, or they…

Computational Geometry · Computer Science 2023-06-13 Max M. Chumley , Melih C. Yesilli , Jisheng Chen , Firas A. Khasawneh , Yang Guo

Persistent homology was shown by Carlsson and Zomorodian to be homology of graded chain complexes with coefficients in the graded ring $\kk[t]$. As such, the behavior of persistence modules -- graded modules over $\kk[t]$ is an important…

Computational Geometry · Computer Science 2013-02-18 Primoz Skraba , Mikael Vejdemo-Johansson

The geometry of neurons is known to be important for their functions. Hence, neurons are often classified by their morphology. Two recent methods, persistent homology and the topological morphology descriptor, assign a morphology descriptor…

Neurons and Cognition · Quantitative Biology 2022-04-08 David Beers , Despoina Goniotaki , Diane P. Hanger , Alain Goriely , Heather A. Harrington

This work introduces a number of algebraic topology approaches, such as multicomponent persistent homology, multi-level persistent homology and electrostatic persistence for the representation, characterization, and description of small…

Quantitative Methods · Quantitative Biology 2018-02-07 Zixuan Cang , Lin Mu , Guowei Wei

Persistent homology is a branch of computational algebraic topology that studies shapes and extracts features over multiple scales. In this paper, we present an unsupervised approach that uses persistent homology to study divergent behavior…

The training of neural networks is usually monitored with a validation (holdout) set to estimate the generalization of the model. This is done instead of measuring intrinsic properties of the model to determine whether it is learning…

Machine Learning · Computer Science 2021-06-02 Asier Gutiérrez-Fandiño , David Pérez-Fernández , Jordi Armengol-Estapé , Marta Villegas

Surface roughness plays an important role in analyzing engineering surfaces. It quantifies the surface topography and can be used to determine whether the resulting surface finish is acceptable or not. Nevertheless, while several existing…

Signal Processing · Electrical Eng. & Systems 2021-10-20 Melih C. Yesilli , Firas A. Khasawneh

While branching network structures abound in nature, their objective analysis is more difficult than expected because existing quantitative methods often rely on the subjective judgment of branch structures. This problem is particularly…

Algebraic Topology · Mathematics 2024-02-13 Haruhisa Oda , Mayuko Kida , Yoichi Nakata , Hiroki Kurihara

We introduce a consistent estimator for the homology (an algebraic structure representing connected components and cycles) of level sets of both density and regression functions. Our method is based on kernel estimation. We apply this…

Statistics Theory · Mathematics 2016-09-30 Omer Bobrowski , Sayan Mukherjee , Jonathan E. Taylor

Topological methods are very rarely used in structural health monitoring (SHM), or indeed in structural dynamics generally, especially when considering the structure and topology of observed data. Topological methods can provide a way of…

Human-Computer Interaction · Computer Science 2022-09-14 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden
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