English
Related papers

Related papers: AmpliconHunter2: a SIMD-Accelerated In-Silico PCR …

200 papers

The development of learning-based hyperspectral image (HSI) compression models has recently attracted significant interest. Existing models predominantly utilize convolutional filters, which capture only local dependencies. Furthermore,they…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Martin Hermann Paul Fuchs , Behnood Rasti , Begüm Demir

Supervised deep learning has shown state-of-the-art performance for medical image segmentation across different applications, including histopathology and cancer research; however, the manual annotation of such data is extremely laborious.…

This study evaluates the performance of three advanced speech encoder models, Wav2Vec 2.0, XLS-R, and Whisper, in speaker identification tasks. By fine-tuning these models and analyzing their layer-wise representations using SVCCA, k-means…

Sound · Computer Science 2025-09-30 Linus Stuhlmann , Michael Alexander Saxer

Full-parameter fine-tuning has become the go-to choice for adapting language models (LMs) to downstream tasks due to its excellent performance. As LMs grow in size, fine-tuning the full parameters of LMs requires a prohibitively large…

Machine Learning · Computer Science 2024-06-18 Yongkang Liu , Yiqun Zhang , Qian Li , Tong Liu , Shi Feng , Daling Wang , Yifei Zhang , Hinrich Schütze

The goal of the ASACUSA (Atomic Spectroscopy And Collisions Using Slow Antiprotons) CUSP experiment at CERN's Antiproton Decelerator is to measure the ground state hyperfine splitting of antihydrogen in order to test whether CPT invariance…

The Speedster-EXD is a new 64x64 pixel, 40 $\mu$m pixel pitch, 100 $\mu$m depletion depth hybrid CMOS X-ray detector (HCD) with the capability of reading out only those pixels containing event charge, thus enabling fast effective frame…

Instrumentation and Methods for Astrophysics · Physics 2016-02-26 Christopher V. Griffith , Abraham D. Falcone , Zachary R. Prieskorn , David N. Burrows

The upgrade to the High Luminosity Large Hadron Collider will pose unprecedented challenges to the tracking systems of all experiments. Recent advancement of active pixel detectors designed in CMOS processes provide attractive alternatives…

Instrumentation and Detectors · Physics 2017-09-13 T. Bisanz , J. Große-Knetter , A. Quadt , J. Rieger , J. Weingarten

Summary: We present several recent improvements to minimap2, a versatile pairwise aligner for nucleotide sequences. Now minimap2 v2.22 can more accurately map long reads to highly repetitive regions and align through insertions or deletions…

Genomics · Quantitative Biology 2021-08-10 Heng Li

The VVC codec is applied to the task of multispectral image (MSI) compression using adaptive and scalable coding structures. In a 'plain' VVC approach, concepts from picture-to-picture temporal prediction are employed for decorrelation…

Image and Video Processing · Electrical Eng. & Systems 2023-01-11 Philipp Seltsam , Priyanka Das , Mathias Wien

We present the architecture, design and first test results of SPIDER, the first prototype of a TSMC CMOS 65 nm ASIC designed for the time measurement path of LHCb Electromagnetic Calorimeter after LS4 Upgrade. The main requirements for the…

This paper studies a novel pre-training technique with unpaired speech data, Speech2C, for encoder-decoder based automatic speech recognition (ASR). Within a multi-task learning framework, we introduce two pre-training tasks for the…

Sound · Computer Science 2022-06-22 Junyi Ao , Ziqiang Zhang , Long Zhou , Shujie Liu , Haizhou Li , Tom Ko , Lirong Dai , Jinyu Li , Yao Qian , Furu Wei

Persistent homology (PH) is a powerful mathematical method to automatically extract relevant insights from images, such as those obtained by high-resolution imaging devices like electron microscopes or new-generation telescopes. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-15 Riccardo Ceccaroni , Lorenzo Di Rocco , Umberto Ferraro Petrillo , Pierpaolo Brutti

This is the manual for the version 2 of HackAnalysis, a powerful, lightweight, versatile and, most importantly, hackable, recasting tool. New features in this version include: compressed event format storage for ultra-fast development;…

High Energy Physics - Phenomenology · Physics 2024-06-17 Mark D. Goodsell

Millimeter wave (mmWave) MIMO will likely use hybrid analog and digital precoding, which uses a small number of RF chains to avoid energy consumption associated with mixed signal components like analog-to-digital components not to mention…

Information Theory · Computer Science 2015-07-17 Xinyu Gao , Linglong Dai , Shuangfeng Han , Chih-Lin I , Robert W. Heath

Magnetic resonance imaging (MRI) using hyperpolarized noble gases provides a way to visualize the structure and function of human lung, but the long imaging time limits its broad research and clinical applications. Deep learning has…

Image and Video Processing · Electrical Eng. & Systems 2023-11-14 Zimeng Li , Sa Xiao , Cheng Wang , Haidong Li , Xiuchao Zhao , Caohui Duan , Qian Zhou , Qiuchen Rao , Yuan Fang , Junshuai Xie , Lei Shi , Fumin Guo , Chaohui Ye , Xin Zhou

Human metapneumovirus (hMPV) poses serious risks to pediatric, elderly, and immunocompromised populations. Traditional antibody discovery pipelines require 10-12 months, limiting their applicability for rapid outbreak response. This project…

Quantitative Methods · Quantitative Biology 2025-09-01 Shawnak Shivakumar , Matthew Sandora

High-performance micro-kernels must fully exploit today's diverse and specialized hardware to deliver peak performance to DNNs. While higher-level optimizations for DNNs are offered by numerous compilers (e.g., MLIR, TVM, OpenXLA),…

Accelerated computing is widely used in high-performance computing. Therefore, it is crucial to experiment and discover how to better utilize GPUGPUs latest generations on relevant applications. In this paper, we present results and share…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-13 Baodi Shan , Mauricio Araya-Polo

Hardware verification is one of the most challenging stages of the hardware design process, requiring significant time and resources to ensure a design is fully validated and production-ready. Verification teams aim to maximize design…

Hardware Architecture · Computer Science 2026-05-22 Sean Lowe , Elias Hilaneh , Alma Babbit , Nakul Gopalan , Vidya Chhabria , Aman Arora

We present a new video compression framework (ViSTRA2) which exploits adaptation of spatial resolution and effective bit depth, down-sampling these parameters at the encoder based on perceptual criteria, and up-sampling at the decoder using…

Image and Video Processing · Electrical Eng. & Systems 2021-06-22 Fan Zhang , Mariana Afonso , David R. Bull