Genomics · Quantitative Biology
Fast and accurate alignment of long bisulfite-seq reads
Brent S. Pedersen, Kenneth Eyring, Subhajyoti De, Ivana V. Yang +1
2014-05-14
Genomics · Quantitative Biology
Multiple Sequence Alignment System for Pyrosequencing Reads
Fahad Saeed, Ashfaq Khokhar, Osvaldo Zagordi, Niko Beerenwinkel
2016-09-08
Genomics · Quantitative Biology
HQAlign: Aligning nanopore reads for SV detection using current-level modeling
Dhaivat Joshi, Suhas Diggavi, Mark J. P. Chaisson, Sreeram Kannan
2023-01-25
Genomics · Quantitative Biology
FPGA Acceleration of Short Read Alignment
Nathaniel McVicar, Akina Hoshino, Anna La Torre, Thomas A. Reh +2
2018-05-02
Genomics · Quantitative Biology
Concurrent and Accurate RNA Sequencing on Multicore Platforms
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina +3
2013-04-03
Genomics · Quantitative Biology
Technology dictates algorithms: Recent developments in read alignment
Mohammed Alser, Jeremy Rotman, Kodi Taraszka, Huwenbo Shi +12
2023-11-21
Computation and Language · Computer Science
Aligner: Efficient Alignment by Learning to Correct
Jiaming Ji, Boyuan Chen, Hantao Lou, Donghai Hong +5
2024-11-05
Distributed, Parallel, and Cluster Computing · Computer Science
i2MapReduce: Incremental MapReduce for Mining Evolving Big Data
Yanfeng Zhang, Shimin Chen, Qiang Wang, Ge Yu
2015-01-21
Machine Learning · Computer Science
A Few Bad Neurons: Isolating and Surgically Correcting Sycophancy
Claire O'Brien, Jessica Seto, Dristi Roy, Aditya Dwivedi +5
2026-01-28
Quantitative Methods · Quantitative Biology
Approximate statistical alignment by iterative sampling of substitution matrices
Joseph L. Herman, Adrienn Szabó, Instván Miklós, Jotun Hein
2015-01-22
Computer Vision and Pattern Recognition · Computer Science
Multi-scale Matching Networks for Semantic Correspondence
Dongyang Zhao, Ziyang Song, Zhenghao Ji, Gangming Zhao +2
2021-08-30