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Background: Identification of the interactions and regulatory relations between biomolecules play pivotal roles in understanding complex biological systems and the mechanisms underlying diverse biological functions. However, the collection…

Computation and Language · Computer Science 2025-04-24 Gilchan Park , Byung-Jun Yoon , Xihaier Luo , Vanessa López-Marrero , Shinjae Yoo , Shantenu Jha

Large Language Models (LLMs) have recently been widely used for code generation. Due to the complexity and opacity of LLMs, little is known about how these models generate code. We made the first attempt to bridge this knowledge gap by…

Software Engineering · Computer Science 2024-05-24 Bonan Kou , Shengmai Chen , Zhijie Wang , Lei Ma , Tianyi Zhang

In recent years, large-scale language models (LLMs) have gained attention for their impressive text generation capabilities. However, these models often face the challenge of "hallucination," which undermines their reliability. In this…

Computation and Language · Computer Science 2023-10-10 Yuchen Yang , Houqiang Li , Yanfeng Wang , Yu Wang

Retrieval-augmented generation (RAG) mitigates many problems of fully parametric language models, such as temporal degradation, hallucinations, and lack of grounding. In RAG, the model's knowledge can be updated from documents provided in…

Machine Learning · Computer Science 2024-10-10 Evgenii Kortukov , Alexander Rubinstein , Elisa Nguyen , Seong Joon Oh

While large language models (LLMs) leverage both knowledge and reasoning during inference, the capacity to distinguish between them plays a pivotal role in model analysis, interpretability, and development. Inspired by dual-system cognitive…

Artificial Intelligence · Computer Science 2025-07-25 Mutian Yang , Jiandong Gao , Ji Wu

We propose a method to teach multiple large language models (LLM) to collaborate by interleaving their generations at the token level. We model the decision of which LLM generates the next token as a latent variable. By optimizing the…

Computation and Language · Computer Science 2024-08-28 Shannon Zejiang Shen , Hunter Lang , Bailin Wang , Yoon Kim , David Sontag

Large language models (LLMs) have become essential tools in software development, widely used for requirements engineering, code generation and review tasks. Software engineers often rely on LLMs to assess whether system code implementation…

Software Engineering · Computer Science 2025-08-19 Haolin Jin , Huaming Chen

Semantic conflicts arise when a developer introduces changes to a codebase that unintentionally affect the behavior of changes integrated in parallel by other developers. Traditional merge tools are unable to detect such conflicts, so…

Software Engineering · Computer Science 2025-08-15 Nathalia Barbosa , Paulo Borba , Léuson Da Silva

Large language models (LLMs) have achieved remarkable success across a wide range of applications especially when augmented by external knowledge through retrieval-augmented generation (RAG). Despite their widespread adoption, recent…

Computation and Language · Computer Science 2026-04-14 Tianzhe Zhao , Jiaoyan Chen , Shuxiu Zhang , Haiping Zhu , Qika Lin , Jun Liu

While large language models (LLMs) excel at factual recall, the real challenge lies in knowledge application. A gap persists between their ability to answer complex questions and their effectiveness in performing tasks that require that…

Computation and Language · Computer Science 2026-01-21 Siyang Wu , Honglin Bao , Nadav Kunievsky , James A. Evans

Large Language Models (LLMs) are widely used for automated code generation, yet their apparent successes often mask a tension between pretraining objectives and alignment choices. While pretraining encourages models to exploit all available…

Software Engineering · Computer Science 2025-12-25 Oussama Ben Sghaier , Kevin Delcourt , Houari Sahraoui

Existing knowledge-grounded dialogue systems typically use finetuned versions of a pretrained language model (LM) and large-scale knowledge bases. These models typically fail to generalize on topics outside of the knowledge base, and…

Computation and Language · Computer Science 2022-03-17 Zihan Liu , Mostofa Patwary , Ryan Prenger , Shrimai Prabhumoye , Wei Ping , Mohammad Shoeybi , Bryan Catanzaro

In recent years, substantial advancements have been made in the development of large language models, achieving remarkable performance across diverse tasks. To evaluate the knowledge ability of language models, previous studies have…

Computation and Language · Computer Science 2024-05-30 Xunjian Yin , Xu Zhang , Jie Ruan , Xiaojun Wan

Tool-augmented large language models (LLMs) have powered many applications. However, they are likely to suffer from knowledge conflict. In this paper, we propose a new type of knowledge conflict -- Tool-Memory Conflict (TMC), where the…

Software Engineering · Computer Science 2026-01-16 Jiali Cheng , Rui Pan , Hadi Amiri

While large language models (LLMs) have demonstrated impressive capabilities across various natural language processing tasks by acquiring rich factual knowledge from their broad training data, their ability to synthesize and logically…

Computation and Language · Computer Science 2024-07-31 Tianshi Zheng , Jiaxin Bai , Yicheng Wang , Tianqing Fang , Yue Guo , Yauwai Yim , Yangqiu Song

While a lot of recent research focuses on enhancing the textual reasoning capabilities of Large Language Models (LLMs) by optimizing the multi-agent framework or reasoning chains, several benchmark tasks can be solved with 100\% success…

Computation and Language · Computer Science 2025-03-04 Yongchao Chen , Harsh Jhamtani , Srinagesh Sharma , Chuchu Fan , Chi Wang

Can large language models (LLMs) express their uncertainty in situations where they lack sufficient parametric knowledge to generate reasonable responses? This work aims to systematically investigate LLMs' behaviors in such situations,…

Computation and Language · Computer Science 2024-02-19 Genglin Liu , Xingyao Wang , Lifan Yuan , Yangyi Chen , Hao Peng

Large Language Models (LLMs) have become essential for offensive language detection, yet their ability to handle annotation disagreement remains underexplored. Disagreement samples, which arise from subjective interpretations, pose a unique…

Computation and Language · Computer Science 2025-05-20 Junyu Lu , Kai Ma , Kaichun Wang , Kelaiti Xiao , Roy Ka-Wei Lee , Bo Xu , Liang Yang , Hongfei Lin

In recent years, multimodal large language models (MLLMs) have achieved significant breakthroughs, enhancing understanding across text and vision. However, current MLLMs still face challenges in effectively integrating knowledge across…

Computation and Language · Computer Science 2025-03-10 Boyu Jia , Junzhe Zhang , Huixuan Zhang , Xiaojun Wan

As Large Language Models (LLMs) are nondeterministic, the same input can generate different outputs, some of which may be incorrect or hallucinated. If run again, the LLM may correct itself and produce the correct answer. Unfortunately,…

Human-Computer Interaction · Computer Science 2024-05-10 Yoonjoo Lee , Kihoon Son , Tae Soo Kim , Jisu Kim , John Joon Young Chung , Eytan Adar , Juho Kim
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