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Machine learning (ML) has been playing important roles in drug discovery in the past years by providing (pre-)screening tools for prioritising chemical compounds to pass through wet lab experiments. One of the main ML tasks in drug…

Biomolecules · Quantitative Biology 2025-02-25 Alex G. C. de Sá , David B. Ascher

Flammability index (FI) and cone calorimetry outcomes, such as maximum heat release rate, time to ignition, total smoke release, and fire growth rate, are critical factors in evaluating the fire safety of polymers. However, predicting these…

Machine Learning · Computer Science 2025-04-02 Duy Nhat Phan , Alexander B. Morgan , Lokendra Poudel , Rahul Bhowmik

The synthesis of inorganic crystalline materials is essential for modern technology, especially in quantum materials development. However, designing efficient synthesis workflows remains a significant challenge due to the precise…

A novel learnable dictionary encoding layer is proposed in this paper for end-to-end language identification. It is inline with the conventional GMM i-vector approach both theoretically and practically. We imitate the mechanism of…

Audio and Speech Processing · Electrical Eng. & Systems 2018-04-03 Weicheng Cai , Zexin Cai , Xiang Zhang , Xiaoqi Wang , Ming Li

Soft matter materials and polymers are widely used in the controlled delivery of drugs. Simulation and modeling provide insight at the atomic scale enabling a level of control unavailable to experiments. We present a workflow protocol for…

Soft Condensed Matter · Physics 2022-03-08 James P. Andrews , Estela Blaisten-Barojas

This work introduces a method for generating generalized structures of amorphous polymers using simulated polymerization and molecular dynamics equilibration, with a particular focus on amorphous polymers. The techniques and algorithms used…

Soft Condensed Matter · Physics 2024-04-04 Jianchuan Liu , Haiyan Lin , Xun Li

Mining large corpora can generate useful discoveries but is time-consuming for humans. We formulate a new task, D5, that automatically discovers differences between two large corpora in a goal-driven way. The task input is a problem…

Computation and Language · Computer Science 2023-10-26 Ruiqi Zhong , Peter Zhang , Steve Li , Jinwoo Ahn , Dan Klein , Jacob Steinhardt

Chemical structure has been long recognized to greatly influence polymer glass formation, but a general molecular theory that predicts how chemical structure determines the properties of glass-forming polymers has been slow to develop.…

Soft Condensed Matter · Physics 2017-11-01 Wen-Sheng Xu , Karl F. Freed

With the rapid evolution of global autonomous driving technology, the demand for its core sensing hardware, Light Detection and Ranging (LiDAR), is escalating. As the light source part of the LiDAR system, lasers, particularly the…

We consider controllable DNA sequence design, where sequences are generated by conditioning on specific biological properties. While language models (LMs) such as GPT and BERT have achieved remarkable success in natural language generation,…

Machine Learning · Computer Science 2025-12-10 Xingyu Su , Xiner Li , Yuchao Lin , Ziqian Xie , Degui Zhi , Shuiwang Ji

We address the product question generation task. For a given product description, our goal is to generate questions that reflect potential user information needs that are either missing or not well covered in the description. Moreover, we…

Computation and Language · Computer Science 2022-07-07 Haggai Roitman , Uriel Singer , Yotam Eshel , Alexander Nus , Eliyahu Kiperwasser

Deep learning models are gaining popularity and potency in predicting polymer properties. These models can be built using pre-existing data and are useful for the rapid prediction of polymer properties. However, the performance of a deep…

Materials Science · Physics 2022-10-14 Himanshu , Tarak K Patra

Diffusion based Text-To-Music (TTM) models generate music corresponding to text descriptions. Typically UNet based diffusion models condition on text embeddings generated from a pre-trained large language model or from a cross-modality…

Audio and Speech Processing · Electrical Eng. & Systems 2025-01-28 Jisi Zhang , Pablo Peso Parada , Md Asif Jalal , Karthikeyan Saravanan

Deep learning (DL) techniques are gaining more and more attention in the software engineering community. They have been used to support several code-related tasks, such as automatic bug fixing and code comments generation. Recent studies in…

With the evergrowing sizes of pre-trained models (PTMs), it has been an emerging practice to only provide the inference APIs for users, namely model-as-a-service (MaaS) setting. To adapt PTMs with model parameters frozen, most current…

Computation and Language · Computer Science 2023-05-25 Ganqu Cui , Wentao Li , Ning Ding , Longtao Huang , Zhiyuan Liu , Maosong Sun

We present a simulation of various active learning strategies for the discovery of polymer solar cell donor/acceptor pairs using data extracted from the literature spanning $\sim$20 years by a natural language processing pipeline. While…

Materials Science · Physics 2024-08-08 Pranav Shetty , Aishat Adeboye , Sonakshi Gupta , Chao Zhang , Rampi Ramprasad

We introduce G2T-LLM, a novel approach for molecule generation that uses graph-to-tree text encoding to transform graph-based molecular structures into a hierarchical text format optimized for large language models (LLMs). This encoding…

Machine Learning · Computer Science 2024-10-04 Zhaoning Yu , Xiangyang Xu , Hongyang Gao

The success of language models, especially transformer-based architectures, has trickled into other domains giving rise to "scientific language models" that operate on small molecules, proteins or polymers. In chemistry, language models…

Chemical Physics · Physics 2024-10-22 Nikita Janakarajan , Tim Erdmann , Sarath Swaminathan , Teodoro Laino , Jannis Born

Deep generative models are increasingly becoming integral parts of the in silico molecule design pipeline and have dual goals of learning the chemical and structural features that render candidate molecules viable while also being flexible…

Biomolecules · Quantitative Biology 2021-06-08 Yair Schiff , Vijil Chenthamarakshan , Karthikeyan Natesan Ramamurthy , Payel Das

Quantitative and numerical comprehension in language is an important task in many fields like education and finance, but still remains a challenging task for language models. While tool and calculator usage has shown to be helpful to…

Computation and Language · Computer Science 2024-06-27 Vishruth Veerendranath , Vishwa Shah , Kshitish Ghate