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Inverse molecular design with diffusion models holds great potential for advancements in material and drug discovery. Despite success in unconditional molecular generation, integrating multiple properties such as synthetic score and gas…

Machine Learning · Computer Science 2024-10-04 Gang Liu , Jiaxin Xu , Tengfei Luo , Meng Jiang

This research introduces a novel text generation model that combines BERT's semantic interpretation strengths with GPT-4's generative capabilities, establishing a high standard in generating coherent, contextually accurate language. Through…

Computation and Language · Computer Science 2024-11-20 Jiajing Chen , Shuo Wang , Zhen Qi , Zhenhong Zhang , Chihang Wang , Hongye Zheng

Machine learning has rapidly advanced the design and discovery of new materials with targeted applications in various systems. First-principles calculations and other computer experiments have been integrated into material design pipelines…

A major challenge in computational chemistry is the generation of novel molecular structures with desirable pharmacological and physiochemical properties. In this work, we investigate the potential use of autoencoder, a deep learning…

Machine Learning · Computer Science 2017-11-22 Thomas Blaschke , Marcus Olivecrona , Ola Engkvist , Jürgen Bajorath , Hongming Chen

This study addresses the application of encoder-only Pre-trained Language Models (PLMs) in keyphrase generation (KPG) amidst the broader availability of domain-tailored encoder-only models compared to encoder-decoder models. We investigate…

Computation and Language · Computer Science 2024-02-23 Di Wu , Wasi Uddin Ahmad , Kai-Wei Chang

In recent years, the integration of Large Language Models (LLMs) into recommender systems has garnered interest among both practitioners and researchers. Despite this interest, the field is still emerging, and the lack of open-source R&D…

Information Retrieval · Computer Science 2024-04-12 Shuyuan Xu , Wenyue Hua , Yongfeng Zhang

Understanding and predicting polymer solubility in various solvents is critical for applications ranging from recycling to pharmaceutical formulation. This work presents a deep learning framework that predicts polymer solubility, expressed…

Machine Learning · Computer Science 2025-12-11 Andrew Reinhard

We introduce T5Gemma 2, the next generation of the T5Gemma family of lightweight open encoder-decoder models, featuring strong multilingual, multimodal and long-context capabilities. T5Gemma 2 follows the adaptation recipe (via UL2) in…

This paper introduces a novel approach for identifying the possible large language models (LLMs) involved in text generation. Instead of adding an additional classification layer to a base LM, we reframe the classification task as a…

Computation and Language · Computer Science 2024-02-08 Yutian Chen , Hao Kang , Vivian Zhai , Liangze Li , Rita Singh , Bhiksha Raj

Multilingual understanding models (or encoder-based), pre-trained via masked language modeling, have achieved promising results on many language understanding tasks (e.g., mBERT). However, these non-autoregressive (NAR) models still…

Computation and Language · Computer Science 2023-05-23 Bohong Wu , Fei Yuan , Hai Zhao , Lei Li , Jingjing Xu

Materials discovery is decisive for tackling urgent challenges related to energy, the environment, health care and many others. In chemistry, conventional methodologies for innovation usually rely on expensive and incremental strategies to…

Machine Learning · Computer Science 2020-06-09 Daniel Schwalbe-Koda , Rafael Gómez-Bombarelli

Constrained decoding approaches aim to control the meaning or style of text generated by the pre-trained large language models (LLMs or also PLMs) for various tasks at inference time. However, these methods often guide plausible…

Computation and Language · Computer Science 2025-05-06 Chen Xu , Tian Lan , Yu Ji , Changlong Yu , Wei Wang , Jun Gao , Qunxi Dong , Kun Qian , Piji Li , Wei Bi , Bin Hu

Owing to its unique literal and aesthetical characteristics, automatic generation of Chinese poetry is still challenging in Artificial Intelligence, which can hardly be straightforwardly realized by end-to-end methods. In this paper, we…

Computation and Language · Computer Science 2019-12-02 Liming Deng , Jie Wang , Hangming Liang , Hui Chen , Zhiqiang Xie , Bojin Zhuang , Shaojun Wang , Jing Xiao

Modern embedding-based metrics for evaluation of generated text generally fall into one of two paradigms: discriminative metrics that are trained to directly predict which outputs are of higher quality according to supervised human…

Computation and Language · Computer Science 2022-12-13 Yiwei Qin , Weizhe Yuan , Graham Neubig , Pengfei Liu

Life and physical sciences have always been quick to adopt the latest advances in machine learning to accelerate scientific discovery. Examples of this are cell segmentation or cancer detection. Nevertheless, these exceptional results are…

Machine Learning · Computer Science 2022-04-26 Juan Manuel Parrilla-Gutierrez

Deep learning is now widely used in drug discovery, providing significant acceleration and cost reduction. As the most fundamental building block, molecular representation is essential for predicting molecular properties to enable various…

Machine Learning · Computer Science 2024-04-22 Haoqiang Guo , Sendong Zhao , Haochun Wang , Yanrui Du , Bing Qin

Large language models (LLMs) offer new opportunities for automated data extraction and property prediction across materials science, yet their use in superconductivity research remains limited. Here we construct a large experimental…

Materials Science · Physics 2025-12-12 Suman Itani , Yibo Zhang , Ranjit Itani , Jiadong Zang

We provide the first exploration of sentence embeddings from text-to-text transformers (T5). Sentence embeddings are broadly useful for language processing tasks. While T5 achieves impressive performance on language tasks cast as…

Computation and Language · Computer Science 2021-12-15 Jianmo Ni , Gustavo Hernández Ábrego , Noah Constant , Ji Ma , Keith B. Hall , Daniel Cer , Yinfei Yang

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

Recently, text-to-molecule models have shown great potential across various chemical applications, e.g., drug-discovery. These models adapt language models to molecular data by representing molecules as sequences of atoms. However, they…

Computation and Language · Computer Science 2025-09-18 Seojin Kim , Hyeontae Song , Jaehyun Nam , Jinwoo Shin