Related papers: Dynamic Dyck and Tree Edit Distance: Decomposition…
Tree comparison metrics have proven to be an invaluable aide in the reconstruction and analysis of phylogenetic (evolutionary) trees. The path-length distance between trees is a particularly attractive measure as it reflects differences in…
Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…
We consider the phylogenetic tree reconstruction problem with insertions and deletions (indels). Phylogenetic algorithms proceed under a model where sequences evolve down the model tree, and given sequences at the leaves, the problem is to…
We give an algorithm that given a graph $G$ with $n$ vertices and $m$ edges and an integer $k$, in time $O_k(n^{1+o(1)}) + O(m)$ either outputs a rank decomposition of $G$ of width at most $k$ or determines that the rankwidth of $G$ is…
Computing the similarity between two data points plays a vital role in many machine learning algorithms. Metric learning has the aim of learning a good metric automatically from data. Most existing studies on metric learning for…
This paper introduces a novel stability measure for edit distances between merge trees of piecewise linear scalar fields. We apply the new measure to various metrics introduced recently in the field of scalar field comparison in scientific…
Parameterized complexity theory has lead to a wide range of algorithmic breakthroughs within the last decades, but the practicability of these methods for real-world problems is still not well understood. We investigate the practicability…
Given its status as a classic problem and its importance to both theoreticians and practitioners, edit distance provides an excellent lens through which to understand how the theoretical analysis of algorithms impacts practical…
In this work, we revisit the fundamental and well-studied problem of approximate pattern matching under edit distance. Given an integer $k$, a pattern $P$ of length $m$, and a text $T$ of length $n \ge m$, the task is to find substrings of…
We study dynamic algorithms for the longest increasing subsequence (\textsf{LIS}) problem. A dynamic \textsf{LIS} algorithm maintains a sequence subject to operations of the following form arriving one by one: (i) insert an element, (ii)…
We present the first non-trivial fully dynamic algorithm maintaining exact single-source distances in unweighted graphs. This resolves an open problem stated by Sankowski [COCOON 2005] and van den Brand and Nanongkai [FOCS 2019]. Previous…
In the dynamic metric $k$-median problem, we wish to maintain a set of $k$ centers $S \subseteq V$ in an input metric space $(V, d)$ that gets updated via point insertions/deletions, so as to minimize the objective $\sum_{x \in V} \min_{y…
We present time-efficient distributed algorithms for decomposing graphs with large edge or vertex connectivity into multiple spanning or dominating trees, respectively. As their primary applications, these decompositions allow us to achieve…
{\em Reoptimization} is a setting in which we are given an (near) optimal solution of a problem instance and a local modification that slightly changes the instance. The main goal is that of finding an (near) optimal solution of the…
Traditional orthogonal range problems allow queries over a static set of points, each with some value. Dynamic variants allow points to be added or removed, one at a time. To support more powerful updates, we introduce the Grid Range class…
The notions of cutwidth and pathwidth of digraphs play a central role in the containment theory for tournaments, or more generally semi-complete digraphs, developed in a recent series of papers by Chudnovsky, Fradkin, Kim, Scott, and…
We give a dimensionality reduction procedure to approximate the sum of distances of a given set of $n$ points in $R^d$ to any "shape" that lies in a $k$-dimensional subspace. Here, by "shape" we mean any set of points in $R^d$. Our…
In this work, we tackle a natural variation of the String Matching Problem on the case of a dynamic pattern, that is, given a static text $T$ and a pattern $P$, we want to support character additions and deletions to the pattern, and after…
The Fr\'echet distance is a computational mainstay for comparing polygonal curves. The Fr\'echet distance under translation, which is a translation invariant version, considers the similarity of two curves independent of their location in…
We study two fundamental decremental dynamic graph problems. In both problems, we need to maintain a vertex-weighted forest of size $n$ under edge deletions, weight updates, and a certain information-retrieval query. Both problems can be…