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The neural network is a powerful computing framework that has been exploited by biological evolution and by humans for solving diverse problems. Although the computational capabilities of neural networks are determined by their structure,…

Neural and Evolutionary Computing · Computer Science 2019-03-27 Nathaniel Rodriguez , Eduardo Izquierdo , Yong-Yeol Ahn

Recent works have highlighted the need for a new dynamical paradigm in the modeling of brain function and evolution. Specifically, these models should incorporate non-constant and asymmetric synaptic weights $T_{ij}$ in the neuron-neuron…

Neurons and Cognition · Quantitative Biology 2025-11-03 Franco Cardin , Alberto Lovison , Amos Maritan , Aram Megighian

Periodically sheared colloids at low densities demonstrate a dynamical phase transition from an inactive to active phase as the strain amplitude is increased. The inactive phase consists of no collisions/contacts between particles in the…

Statistical Mechanics · Physics 2015-06-15 S. -L. -Y. Xu , J. M. Schwarz

Lack of memory (locality in time) is a major limitation of almost all present time-dependent density functional approximations. By using semiclassical dynamics to compute correlation effects within a density-matrix functional approach, we…

Chemical Physics · Physics 2015-05-18 A. K. Rajam , I. Raczkowska , N. T. Maitra

A growing body of research indicates that structural plasticity mechanisms are crucial for learning and memory consolidation. Starting from a simple phenomenological model, we exploit a mean-field approach to develop a theoretical framework…

Neurons and Cognition · Quantitative Biology 2024-06-19 Gianmarco Tiddia , Luca Sergi , Bruno Golosio

Friction is a phenomenon that manifests across all spatial and temporal scales, from the molecular to the macroscopic scale. It describes the dissipation of energy from the motion of particles or abstract reaction coordinates and arises in…

A colloidal particle is a prominent example of a stochastic system, and, if suspended in a simple viscous liquid, very closely resembles the case of an ideal random walker. A variety of new phenomena have been observed when such colloid is…

Soft Condensed Matter · Physics 2020-02-10 Boris Müller , Johannes Berner , Clemens Bechinger , Matthias Krüger

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological…

Statistical Mechanics · Physics 2015-07-08 Ricardo Martínez-García , Clara Murgui , Emilio Hernández-García , Cristóbal López

We show that memory can be encoded in a model amorphous solid subjected to athermal oscillatory shear deformations, and in an analogous spin model with disordered interactions, sharing the feature of a deformable energy landscape. When…

Statistical Mechanics · Physics 2014-01-17 D. Fiocco , G. Foffi , S. Sastry

Hybrid particle-field molecular dynamics combines standard molecular potentials with density-field models into a computationally efficient methodology that is well-adapted for the study of mesoscale soft matter systems. Here, we introduce a…

Computational Physics · Physics 2020-07-06 Sigbjørn Løland Bore , Michele Cascella

We consider a dynamical system to have memory if it remembers the current state as well as the state before that. The dynamics is defined as follows: $x_{n+1}=T_{\alpha}(x_{n-1},x_{n})=\tau (\alpha \cdot x_{n}+(1-\alpha)\cdot x_{n-1}),$…

Dynamical Systems · Mathematics 2016-04-26 Paweł Góra , Abraham Boyarsky , Zhenyang Li , Harald Proppe

Particles kicked by external forces to produce mobility distinct from thermal diffusion are an iconic feature of the active matter problem. Here, we map this onto a minimal model for experiment and theory covering the wide time and length…

Soft Condensed Matter · Physics 2021-01-21 Jin Tae Park , Govind Paneru , Chulan Kwon , Steve Granick , Hyuk Kyu Pak

In amorphous solids subject to shear or thermal excitation, so-called structural indicators have been developed that predict locations of future plasticity or particle rearrangements. An open question is whether similar tools can be used in…

Soft Condensed Matter · Physics 2022-01-31 Julia A. Giannini , Ethan M. Stanifer , M. Lisa Manning

A new density matrix and corresponding quantum kinetic equations are introduced for fermions undergoing coherent evolution either in time (coherent particle production) or in space (quantum reflection). A central element in our derivation…

High Energy Physics - Phenomenology · Physics 2009-02-02 Matti Herranen , Kimmo Kainulainen , Pyry Matti Rahkila

We study dynamics of clustering in systems containing active particles that are immersed in an explicit solvent. For this purpose we have adopted a hybrid simulation method, consisting of molecular dynamics and multi-particle collision…

Soft Condensed Matter · Physics 2021-01-01 Arabinda Bera , Soudamini Sahoo , Snigdha Thakur , Subir K. Das

We reformulate time evolution of systems in mixed states in terms of the classical observables of correlators using the Weyl correspondence rule. The resulting equation of motion for the Wigner functional of the density matrix is found to…

High Energy Physics - Theory · Physics 2007-05-23 Herbert Nachbagauer

Recent theoretical studies found that mixtures of active and passive colloidal particles phase separate but only at very high activity ratio. The high value poses serious obstacles for experimental exploration of this phenomenon. Here we…

Soft Condensed Matter · Physics 2017-03-08 Jan Smrek , Kurt Kremer

Earlier we proposed the stochastic point process model, which reproduces a variety of self-affine time series exhibiting power spectral density S(f) scaling as power of the frequency f and derived a stochastic differential equation with the…

Physics and Society · Physics 2008-12-02 V. Gontis , B. Kaulakys

We propose a new model for the description of complex granular particles and their interaction in molecular dynamics simulations of granular material in two dimensions. The grains are composed of triangles which are connected by deformable…

adap-org · Physics 2012-08-29 Thorsten Poeschel , Volkhard Buchholtz

We offer an alternative real-space description, based purely on activated processes, for the understanding of relaxation dynamics in hierarchical landscapes. To this end, we use the cluster model, a coarse-grained lattice model of a jammed…

Soft Condensed Matter · Physics 2024-06-27 Mahajabin Rahman , Stefan Boettcher