Related papers: Online computation of normalized substring complex…
We provide the first online algorithm for spectral hypergraph sparsification. In the online setting, hyperedges with positive weights are arriving in a stream, and upon the arrival of each hyperedge, we must irrevocably decide whether or…
In this paper, we consider a generalized longest common subsequence problem, in which a constraining sequence of length $s$ must be included as a substring and the other constraining sequence of length $t$ must be excluded as a subsequence…
Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…
In this work, we study the limits of compressed data structures, i.e., structures that support various queries on an input text $T\in\Sigma^n$ using space proportional to the size of $T$ in compressed form. Nearly all fundamental queries…
We consider the problem of monotone, submodular maximization over a ground set of size $n$ subject to cardinality constraint $k$. For this problem, we introduce the first deterministic algorithms with linear time complexity; these…
Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…
We study the classic set cover problem from the perspective of sub-linear algorithms. Given access to a collection of $m$ sets over $n$ elements in the query model, we show that sub-linear algorithms derived from existing techniques have…
We revisit the problem of \textit{online linear optimization} in case the set of feasible actions is accessible through an approximated linear optimization oracle with a factor $\alpha$ multiplicative approximation guarantee. This setting…
We revisit the MaxSAT problem in the data stream model. In this problem, the stream consists of $m$ clauses that are disjunctions of literals drawn from $n$ Boolean variables. The objective is to find an assignment to the variables that…
In the All-Reduce problem, each one of the K nodes holds an input and wishes to compute the sum of all K inputs through a communication network where each pair of nodes is connected by a parallel link with arbitrary bandwidth. The…
In the graph clustering problem with a planted solution, the input is a graph on $n$ vertices partitioned into $k$ clusters, and the task is to infer the clusters from graph structure. A standard assumption is that clusters induce…
This paper investigates the number of quantum queries made to solve the problem of reconstructing an unknown string from its substrings in a certain query model. More concretely, the goal of the problem is to identify an unknown string $S$…
Consider n nodes connected to a single coordinator. Each node receives an individual online data stream of numbers and, at any point in time, the coordinator has to know the k nodes currently observing the largest values, for a given k…
We present data streaming algorithms for the $k$-median problem in high-dimensional dynamic geometric data streams, i.e. streams allowing both insertions and deletions of points from a discrete Euclidean space $\{1, 2, \ldots \Delta\}^d$.…
We exhibit an online algorithm finding all distinct palindromes inside a given string in time $\Theta(n\log|\Sigma|)$ over an ordered alphabet and in time $\Theta(n|\Sigma|)$ over an unordered alphabet. Using a reduction from a…
Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…
Kolmogorov complexity measures the algorithmic complexity of a finite binary string $\sigma$ in terms of the length of the shortest description $\sigma^*$ of $\sigma$. Traditionally, the length of a string is taken to measure the amount of…
The even online Kolmogorov complexity of a string $x = x_1 x_2 \cdots x_{n}$ is the minimal length of a program that for all $i\le n/2$, on input $x_1x_3 \cdots x_{2i-1}$ outputs $x_{2i}$. The odd complexity is defined similarly. The sum of…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…
Balliu et al. (DISC 2020) classified the hardness of solving binary labeling problems with distributed graph algorithms; in these problems the task is to select a subset of edges in a $2$-colored tree in which white nodes of degree $d$ and…