Related papers: Online computation of normalized substring complex…
In this work, we consider the problem of sampling a $k$-clique in a graph from an almost uniform distribution in sublinear time in the general graph query model. Specifically the algorithm should output each $k$-clique with probability…
Define $\|n\|$ to be the complexity of $n$, the smallest number of ones needed to write $n$ using an arbitrary combination of addition and multiplication. Define $n$ to be stable if for all $k\ge 0$, we have $\|3^k n\|=\|n\|+3k$. In [7],…
We study structure of pure morphic and morphic sequences and prove the following result: the subword complexity of arbitrary morphic sequence is either $\Theta(n^{1+1/k})$ for some $k\in\mathbb N$, or is $O(n \log n)$.
We give a near-optimal quantum algorithm for the longest common substring (LCS) problem between two run-length encoded (RLE) strings, with the assumption that the prefix-sums of the run-lengths are given. Our algorithm costs…
Subset Sum is a classical optimization problem taught to undergraduates as an example of an NP-hard problem, which is amenable to dynamic programming, yielding polynomial running time if the input numbers are relatively small. Formally,…
In the problem of the longest common substring with $k$ mismatches we are given two strings $X, Y$ and must find the maximal length $\ell$ such that there is a length-$\ell$ substring of $X$ and a length-$\ell$ substring of $Y$ that differ…
We study the classical metric $k$-median clustering problem over a set of input rankings (i.e., permutations), which has myriad applications, from social-choice theory to web search and databases. A folklore algorithm provides a…
The problem called "String reconstruction from substrings" is a mathematical model of sequencing by hybridization that plays an important role in DNA sequencing. In this problem, we are given a blackbox oracle holding an unknown string…
Based on the Breslauer-Italiano online suffix tree construction algorithm (2013) with double logarithmic worst-case guarantees on the update time per letter, we develop near-real-time algorithms for several classical problems on strings,…
This study investigates whether reoptimization can help in solving the closest substring problem. We are dealing with the following reoptimization scenario. Suppose, we have an optimal l-length closest substring of a given set of sequences…
The online square detection problem is to detect the first occurrence of a square in a string whose characters are provided as input one at a time. Recall that a square is a string that is a concatenation of two identical strings. In this…
We study the possibility of designing $N^{o(1)}$-round protocols for problems of substantially super-linear polynomial-time (sequential) complexity on the congested clique with about $N^{1/2}$ nodes, where $N$ is the input size. We show…
In today's data-centric world, fast and effective compression of data is paramount. To measure success towards the second goal, Kempa and Prezza [STOC2018] introduce the string attractor, a combinatorial object unifying dictionary-based…
A compressed self-index stores a string in compressed form while supporting locate queries without decompression. For highly repetitive strings (arising in web crawls, versioned documents, and genomic collections), static self-indexes can…
We initiate the study of the Maximal Matching problem in bounded-deletion graph streams. In this setting, a graph $G$ is revealed as an arbitrary sequence of edge insertions and deletions, where the number of insertions is unrestricted but…
We show that both clustering and subspace embeddings can be performed in the streaming model with the same asymptotic efficiency as in the central/offline setting. For $(k, z)$-clustering in the streaming model, we achieve a number of words…
We consider the classic Euclidean $k$-median and $k$-means objective on data streams, where the goal is to provide a $(1+\varepsilon)$-approximation to the optimal $k$-median or $k$-means solution, while using as little memory as possible.…
Constrained $k$-submodular maximization is a general framework that captures many discrete optimization problems such as ad allocation, influence maximization, personalized recommendation, and many others. In many of these applications,…
In this paper, we consider two versions of the Text Assembling problem. We are given a sequence of strings $s^1,\dots,s^n$ of total length $L$ that is a dictionary, and a string $t$ of length $m$ that is texts. The first version of the…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…