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Graph neural networks (GNNs) have brought revolutionary advancements to the field of link prediction (LP), providing powerful tools for mining potential relationships in graphs. However, existing methods face challenges when dealing with…

Machine Learning · Computer Science 2025-12-30 Huashen Lu , Wensheng Gan , Guoting Chen , Zhichao Huang , Philip S. Yu

Graph classification is a crucial task in many real-world multimedia applications, where graphs can represent various multimedia data types such as images, videos, and social networks. Previous efforts have applied graph neural networks…

Machine Learning · Computer Science 2023-09-08 Zhengyang Mao , Wei Ju , Yifang Qin , Xiao Luo , Ming Zhang

The success of graph embeddings or node representation learning in a variety of downstream tasks, such as node classification, link prediction, and recommendation systems, has led to their popularity in recent years. Representation learning…

Machine Learning · Computer Science 2018-09-07 Saba A. Al-Sayouri , Danai Koutra , Evangelos E. Papalexakis , Sarah S. Lam

This work presents a two-stage neural architecture for learning and refining structural correspondences between graphs. First, we use localized node embeddings computed by a graph neural network to obtain an initial ranking of soft…

Machine Learning · Computer Science 2020-01-28 Matthias Fey , Jan E. Lenssen , Christopher Morris , Jonathan Masci , Nils M. Kriege

Computer-science-oriented artificial neural networks (ANNs) have achieved tremendous success in a variety of scenarios via powerful feature extraction and high-precision data operations. It is well known, however, that ANNs usually suffer…

Computer Vision and Pattern Recognition · Computer Science 2019-10-01 Zheyu Yang , Yujie Wu , Guanrui Wang , Yukuan Yang , Guoqi Li , Lei Deng , Jun Zhu , Luping Shi

Graph Neural Networks (GNNs) have achieved remarkable success in various graph-based tasks (e.g., node classification or link prediction). Despite their triumphs, GNNs still face challenges such as long training and inference times,…

Machine Learning · Computer Science 2025-07-15 Chu-Yuan Wei , Shun-Yao Liu , Sheng-Da Zhuo , Chang-Dong Wang , Shu-Qiang Huang , Mohsen Guizani

Soybean leaf disease detection is critical for agricultural productivity but faces challenges due to visually similar symptoms and limited interpretability in conventional methods. While Convolutional Neural Networks (CNNs) excel in spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-05-05 Md Abrar Jahin , Soudeep Shahriar , M. F. Mridha , Md. Jakir Hossen , Nilanjan Dey

Recently, Deep Neural Networks (DNNs) have recorded great success in handling medical and other complex classification tasks. However, as the sizes of a DNN model and the available dataset increase, the training process becomes more complex…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-08 Samson B. Akintoye , Liangxiu Han , Xin Zhang , Haoming Chen , Daoqiang Zhang

In this paper, we propose Graph Retention Networks (GRNs) as a unified architecture for deep learning on dynamic graphs. The GRN extends the concept of retention into dynamic graph data as graph retention, equipping the model with three key…

Machine Learning · Computer Science 2026-04-14 Qian Chang , Xia Li , Xiufeng Cheng , Runsong Jia , Jinqing Yang , Guoping Hu , Ciprian Doru Giurcaneanu

In many important graph data processing applications the acquired information includes both node features and observations of the graph topology. Graph neural networks (GNNs) are designed to exploit both sources of evidence but they do not…

Machine Learning · Computer Science 2021-10-28 Eli Chien , Jianhao Peng , Pan Li , Olgica Milenkovic

DNA sequence alignment is important today as it is usually the first step in finding gene mutation, evolutionary similarities, protein structure, drug development and cancer treatment. Covid-19 is one recent example. There are many…

Genomics · Quantitative Biology 2023-06-01 Suchindra , Preetam Nagaraj

Graph Attention Network (GAT) and GraphSAGE are neural network architectures that operate on graph-structured data and have been widely studied for link prediction and node classification. One challenge raised by GraphSAGE is how to smartly…

Machine Learning · Computer Science 2020-06-09 Anderson de Andrade , Chen Liu

Graph Neural Networks (GNNs) have demonstrated significant success in learning from graph-structured data but often struggle on heterophilous graphs, where connected nodes differ in features or class labels. This limitation arises from…

Machine Learning · Computer Science 2025-09-30 Zhongtian Sun , Anoushka Harit , Alexandra Cristea , Christl A. Donnelly , Pietro Liò

We present a novel graph neural network (GNN) architecture for retrieval-augmented generation (RAG) that leverages query-aware attention mechanisms and learned scoring heads to improve retrieval accuracy on complex, multi-hop questions.…

Information Retrieval · Computer Science 2025-08-11 Vibhor Agrawal , Fay Wang , Rishi Puri

The RNA inverse folding problem, a key challenge in RNA design, involves identifying nucleotide sequences that can fold into desired secondary structures, which are critical for ensuring molecular stability and function. The inherent…

Computer Vision and Pattern Recognition · Computer Science 2025-12-04 Guang Yang , Lei Fan

Graph anomaly detection (GAD) aims to identify nodes that deviate from normal patterns in structure or features. While recent GNN-based approaches have advanced this task, they struggle with two major challenges: 1) homophily disparity,…

Machine Learning · Computer Science 2026-03-10 Yunhui Liu , Qizhuo Xie , Yinfeng Chen , Xudong Jin , Tao Zheng , Bin Chong , Tieke He

Graph neural networks (GNNs) have achieved strong performance across various real-world domains. Nevertheless, they suffer from oversquashing, where long-range information is distorted as it is compressed through limited message-passing…

Machine Learning · Computer Science 2026-04-03 Tanvir Hossain , Muhammad Ifte Khairul Islam , Lilia Chebbah , Charles Fanning , Esra Akbas

We analyze the performance of graph neural network (GNN) architectures from the perspective of random graph theory. Our approach promises to complement existing lenses on GNN analysis, such as combinatorial expressive power and worst-case…

Machine Learning · Computer Science 2023-10-12 Drake Brown , Trevor Garrity , Kaden Parker , Jason Oliphant , Stone Carson , Cole Hanson , Zachary Boyd

Graph neural architecture search (GraphNAS) has recently aroused considerable attention in both academia and industry. However, two key challenges seriously hinder the further research of GraphNAS. First, since there is no consensus for the…

Machine Learning · Computer Science 2024-03-12 Yijian Qin , Ziwei Zhang , Xin Wang , Zeyang Zhang , Wenwu Zhu

Cybersecurity threats are growing, making network intrusion detection essential. Traditional machine learning models remain effective in resource-limited environments due to their efficiency, requiring fewer parameters and less…