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\Graph similarity computation is an essential task in many real-world graph-related applications such as retrieving the similar drugs given a query chemical compound or finding the user's potential friends from the social network database.…

Machine Learning · Computer Science 2024-12-18 Jingjing Wang , Hongjie Zhu , Haoran Xie , Fu Lee Wang , Xiaoliang Xu , Yuxiang Wang

Majority of the existing graph neural networks (GNN) learn node embeddings that encode their local neighborhoods but not their positions. Consequently, two nodes that are vastly distant but located in similar local neighborhoods map to…

Social and Information Networks · Computer Science 2021-08-23 Sunil Nishad , Shubhangi Agarwal , Arnab Bhattacharya , Sayan Ranu

Matching, a task to optimally assign limited resources under constraints, is a fundamental technology for society. The task potentially has various objectives, conditions, and constraints; however, the efficient neural network architecture…

Machine Learning · Computer Science 2023-10-20 Shusaku Sone , Jiaxin Ma , Atsushi Hashimoto , Naoya Chiba , Yoshitaka Ushiku

Approximate Nearest Neighbor Search (ANNS) in high-dimensional spaces finds extensive applications in databases, information retrieval, recommender systems, etc. While graph-based methods have emerged as the leading solution for ANNS due to…

Databases · Computer Science 2025-06-23 Jiancheng Ruan , Tingyang Chen , Renchi Yang , Xiangyu Ke , Yunjun Gao

Nanopore based sequencing has demonstrated significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing. We propose a specific multi-layered…

Mesoscale and Nanoscale Physics · Physics 2014-05-15 Towfiq Ahmed , Jason T. Haraldsen , John J. Rehr , Massimiliano Di Ventra , Ivan K. Schuller , Alexander V. Balatsky

Graph neural networks (GNNs) have shown great ability in modeling graphs, however, their performance would significantly degrade when there are noisy edges connecting nodes from different classes. To alleviate negative effect of noisy edges…

Social and Information Networks · Computer Science 2023-09-15 Xiao Shen , Mengqiu Shao , Shirui Pan , Laurence T. Yang , Xi Zhou

We present a framework for learning Node Embeddings from Static Subgraphs (NESS) using a graph autoencoder (GAE) in a transductive setting. NESS is based on two key ideas: i) Partitioning the training graph to multiple static, sparse…

Machine Learning · Computer Science 2023-05-24 Talip Ucar

Neural architecture search has attracted wide attentions in both academia and industry. To accelerate it, researchers proposed weight-sharing methods which first train a super-network to reuse computation among different operators, from…

Machine Learning · Computer Science 2020-12-16 Xin Chen , Lingxi Xie , Jun Wu , Longhui Wei , Yuhui Xu , Qi Tian

We introduce a novel neural network architecture for encoding and synthesis of 3D shapes, particularly their structures. Our key insight is that 3D shapes are effectively characterized by their hierarchical organization of parts, which…

Graphics · Computer Science 2017-05-16 Jun Li , Kai Xu , Siddhartha Chaudhuri , Ersin Yumer , Hao Zhang , Leonidas Guibas

In this paper, we propose a novel hybrid deep learning architecture that synergistically combines Graph Neural Networks (GNNs), Recurrent Neural Networks (RNNs), and multi-head attention mechanisms to significantly enhance cybersecurity…

Cryptography and Security · Computer Science 2025-10-31 Jayant Biradar , Smit Shah , Tanmay Naik

Graph matching can be formalized as a combinatorial optimization problem, where there are corresponding relationships between pairs of nodes that can be represented as edges. This problem becomes challenging when there are potential…

Computer Vision and Pattern Recognition · Computer Science 2023-01-06 Dongdong Chen , Yuxing Dai , Lichi Zhang , Zhihong Zhang

Domain Name System (DNS) tunneling remains a covert channel for data exfiltration and command-and-control communication. Although graph-based methods such as GraphTunnel achieve strong accuracy, they introduce significant latency and…

Computer Vision and Pattern Recognition · Computer Science 2025-12-11 Faraz Ali , Muhammad Afaq , Mahmood Niazi , Muzammil Behzad

Graph Neural Networks (GNNs) have shown success in many real-world applications that involve graph-structured data. Most of the existing single-node GNN training systems are capable of training medium-scale graphs with tens of millions of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-02 Yi-Chien Lin , Viktor Prasanna

Graph Neural Networks (GNNs) have emerged as a flexible and powerful approach for learning over graphs. Despite this success, existing GNNs are constrained by their local message-passing architecture and are provably limited in their…

Machine Learning · Computer Science 2021-10-29 Rajat Talak , Siyi Hu , Lisa Peng , Luca Carlone

Semi-supervised graph anomaly detection (GAD) utilizes a small set of labeled normal nodes to identify abnormal nodes from a large set of unlabeled nodes in a graph. Current methods in this line posit that 1) normal nodes share a similar…

Machine Learning · Computer Science 2025-12-09 Guoguo Ai , Hezhe Qiao , Hui Yan , Guansong Pang

Reliability Assessment Commitment (RAC) Optimization is increasingly important in grid operations due to larger shares of renewable generations in the generation mix and increased prediction errors. Independent System Operators (ISOs) also…

Machine Learning · Computer Science 2023-06-13 Seonho Park , Wenbo Chen , Dahye Han , Mathieu Tanneau , Pascal Van Hentenryck

Entity alignment is crucial for merging knowledge across knowledge graphs, as it matches entities with identical semantics. The standard method matches these entities based on their embedding similarities using semi-supervised learning.…

Computation and Language · Computer Science 2024-10-29 Wei Ai , Yinghui Gao , Jianbin Li , Jiayi Du , Tao Meng , Yuntao Shou , Keqin Li

Neural network-based semantic segmentation has achieved remarkable results when large amounts of annotated data are available, that is, in the supervised case. However, such data is expensive to collect and so methods have been developed to…

Computer Vision and Pattern Recognition · Computer Science 2021-06-25 Xueqing Deng , Yi Zhu , Yuxin Tian , Shawn Newsam

Background: Identifying all possible mapping locations of next-generation sequencing (NGS) reads is highly essential in several applications such as prediction of genomic variants or protein binding motifs located in repeat regions, isoform…

Genomics · Quantitative Biology 2020-03-25 Ngoc Hieu Tran , Xin Chen

This study proposes a hybrid deep-learning-metaheuristic framework with a bi-level architecture for road network design problems (NDPs). We train a graph neural network (GNN) to approximate the solution of the user equilibrium (UE) traffic…

Neural and Evolutionary Computing · Computer Science 2023-12-12 Bahman Madadi , Goncalo Homem de Almeida Correia
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